DeepTraSynergy: drug combinations using multimodal deep learning with transformers

F Rafiei, H Zeraati, K Abbasi, JB Ghasemi… - …, 2023 - academic.oup.com
Motivation Screening bioactive compounds in cancer cell lines receive more attention.
Multidisciplinary drugs or drug combinations have a more effective role in treatments and …

DTSyn: a dual-transformer-based neural network to predict synergistic drug combinations

J Hu, J Gao, X Fang, Z Liu, F Wang… - Briefings in …, 2022 - academic.oup.com
Drug combination therapies are superior to monotherapy for cancer treatment in many ways.
Identifying novel drug combinations by screening is challenging for the wet-lab experiments …

DTF: deep tensor factorization for predicting anticancer drug synergy

Z Sun, S Huang, P Jiang, P Hu - Bioinformatics, 2020 - academic.oup.com
Motivation Combination therapies have been widely used to treat cancers. However, it is
cost and time consuming to experimentally screen synergistic drug pairs due to the …

TranSynergy: Mechanism-driven interpretable deep neural network for the synergistic prediction and pathway deconvolution of drug combinations

Q Liu, L Xie - PLoS computational biology, 2021 - journals.plos.org
Drug combinations have demonstrated great potential in cancer treatments. They alleviate
drug resistance and improve therapeutic efficacy. The fast-growing number of anti-cancer …

DeepSynergy: predicting anti-cancer drug synergy with Deep Learning

K Preuer, RPI Lewis, S Hochreiter, A Bender… - …, 2018 - academic.oup.com
Motivation While drug combination therapies are a well-established concept in cancer
treatment, identifying novel synergistic combinations is challenging due to the size of …

Prediction of synergistic anti-cancer drug combinations based on drug target network and drug induced gene expression profiles

X Li, Y Xu, H Cui, T Huang, D Wang, B Lian, W Li… - Artificial intelligence in …, 2017 - Elsevier
Objective Synergistic drug combinations are promising therapies for cancer treatment.
However, effective prediction of synergistic drug combinations is quite challenging as …

An enhanced cascade-based deep forest model for drug combination prediction

W Lin, L Wu, Y Zhang, Y Wen, B Yan… - Briefings in …, 2022 - academic.oup.com
Combination therapy has shown an obvious curative effect on complex diseases, whereas
the search space of drug combinations is too large to be validated experimentally even with …

MatchMaker: a deep learning framework for drug synergy prediction

HI Kuru, O Tastan, AE Cicek - IEEE/ACM transactions on …, 2021 - ieeexplore.ieee.org
Drug combination therapies have been a viable strategy for the treatment of complex
diseases such as cancer due to increased efficacy and reduced side effects. However …

SNRMPACDC: computational model focused on Siamese network and random matrix projection for anticancer synergistic drug combination prediction

TH Li, CC Wang, L Zhang, X Chen - Briefings in Bioinformatics, 2023 - academic.oup.com
Synergistic drug combinations can improve the therapeutic effect and reduce the drug
dosage to avoid toxicity. In previous years, an in vitro approach was utilized to screen …

GraphSynergy: a network-inspired deep learning model for anticancer drug combination prediction

J Yang, Z Xu, WKK Wu, Q Chu… - Journal of the American …, 2021 - academic.oup.com
Objective To develop an end-to-end deep learning framework based on a protein–protein
interaction (PPI) network to make synergistic anticancer drug combination predictions …