Viewing bacterial colonization through the lens of systems biology
MR Barron, VB Young - Msystems, 2022 - Am Soc Microbiol
The gastrointestinal ecosystem is formed from interactions between the host, indigenous gut
microbiota, and external world. When colonizing the gut, bacteria must overcome barriers …
microbiota, and external world. When colonizing the gut, bacteria must overcome barriers …
The ecosystem services of animal microbiomes
EA McKenney, K Koelle, RR Dunn… - Molecular ecology, 2018 - Wiley Online Library
Microbiologists often evaluate microbial community dynamics by formulating functional
hypotheses based on ecological processes. Indeed, many of the methods and terms …
hypotheses based on ecological processes. Indeed, many of the methods and terms …
Molecular commensalism—how to investigate underappreciated health-associated polymicrobial communities
The study of human commensal bacteria began with the first observation of prokaryotes>
340 years ago. Since then, the study of human-associated microbes has been justifiably …
340 years ago. Since then, the study of human-associated microbes has been justifiably …
Omics approaches to study host–microbiota interactions
Highlights•Intestinal microbiota has profound effects on human physiology and the immune
system.•We need more time course studies on microbiota in prospective cohorts.•The small …
system.•We need more time course studies on microbiota in prospective cohorts.•The small …
Contextual organismality: Beyond pattern to process in the emergence of organisms
Biologists have taken the concept of organism largely for granted. However, advances in the
study of chimerism, symbiosis, bacterial-eukaryote associations, and microbial behavior …
study of chimerism, symbiosis, bacterial-eukaryote associations, and microbial behavior …
[HTML][HTML] Microbial systems ecology to understand cross-feeding in microbiomes
V Mataigne, N Vannier, P Vandenkoornhuyse… - Frontiers in …, 2021 - frontiersin.org
Understanding how microorganism-microorganism interactions shape microbial
assemblages is a key to deciphering the evolution of dependencies and co-existence in …
assemblages is a key to deciphering the evolution of dependencies and co-existence in …
Building the microbiome in health and disease: niche construction and social conflict in bacteria
Microbes collectively shape their environment in remarkable ways via the products of their
metabolism. The diverse environmental impacts of macro-organisms have been collated …
metabolism. The diverse environmental impacts of macro-organisms have been collated …
[HTML][HTML] Human microbiome: symbiosis to pathogenesis
Researchers have come a long way in microorganism research since the first discovery of
microbes as seen through an ingenious hand-held microscope over 300 years ago. In late …
microbes as seen through an ingenious hand-held microscope over 300 years ago. In late …
The microbiome explored: recent insights and future challenges
One of the most exciting scientific advances in recent years has been the realization that
commensal microorganisms are not simple'passengers' in our bodies, but instead have key …
commensal microorganisms are not simple'passengers' in our bodies, but instead have key …
The role of the microbiome in host evolution
O Kolodny, BJ Callahan… - … Transactions of the …, 2020 - royalsocietypublishing.org
In the last decade, we have witnessed a major paradigm shift in the life sciences: the
recognition that the microbiome, ie the set of microorganisms associated with healthy …
recognition that the microbiome, ie the set of microorganisms associated with healthy …