Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines

JC Castle, C Zhang, JK Shah, AV Kulkarni, A Kalsotra… - Nature …, 2008 - nature.com
Alternative pre–messenger RNA splicing influences development, physiology and disease,
but its regulation in humans is not well understood, partially because of the limited scale at …

Deciphering the splicing code

Y Barash, JA Calarco, W Gao, Q Pan, X Wang, O Shai… - Nature, 2010 - nature.com
Alternative splicing has a crucial role in the generation of biological complexity, and its
misregulation is often involved in human disease. Here we describe the assembly of a …

Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays

JM Johnson, J Castle, P Garrett-Engele, Z Kan… - Science, 2003 - science.org
Alternative pre–messenger RNA (pre-mRNA) splicing plays important roles in development,
physiology, and disease, and more than half of human genes are alternatively spliced. To …

Evolutionarily conserved and diverged alternative splicing events show different expression and functional profiles

Z Kan, PW Garrett-Engele, JM Johnson… - Nucleic acids …, 2005 - academic.oup.com
To better decipher the functional impact of alternative splicing, we classified alternative
splicing events in 10 818 pairs of human and mouse genes based on conservation at …

[HTML][HTML] Identification and analysis of splicing quantitative trait loci across multiple tissues in the human genome

D Garrido-Martín, B Borsari, M Calvo, F Reverter… - Nature …, 2021 - nature.com
Alternative splicing (AS) is a fundamental step in eukaryotic mRNA biogenesis. Here, we
develop an efficient and reproducible pipeline for the discovery of genetic variants that affect …

Characteristics and regulatory elements defining constitutive splicing and different modes of alternative splicing in human and mouse

CL Zheng, XD Fu, M Gribskov - Rna, 2005 - rnajournal.cshlp.org
Alternative splicing is a major contributor to genomic complexity, disease, and development.
Previous studies have captured some of the characteristics that distinguish alternative …

Genomics of alternative splicing: evolution, development and pathophysiology

ER Gamazon, BE Stranger - Human genetics, 2014 - Springer
Alternative splicing is a major cellular mechanism in metazoans for generating proteomic
diversity. A large proportion of protein-coding genes in multicellular organisms undergo …

[HTML][HTML] Genome-wide analysis of alternative pre-mRNA splicing

C Ben-Dov, B Hartmann, J Lundgren… - Journal of Biological …, 2008 - ASBMB
Alternative splicing of mRNA precursors allows the synthesis of multiple mRNAs from a
single primary transcript, significantly expanding the information content and regulatory …

Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches

M Chen, JL Manley - Nature reviews Molecular cell biology, 2009 - nature.com
Alternative splicing of mRNA precursors provides an important means of genetic control and
is a crucial step in the expression of most genes. Alternative splicing markedly affects human …

Alternative splicing: global insights

M Hallegger, M Llorian, CWJ Smith - The FEBS journal, 2010 - Wiley Online Library
Following the original reports of pre‐mRNA splicing in 1977, it was quickly realized that
splicing together of different combinations of splice sites–alternative splicing–allows …