A human cell atlas of fetal gene expression

J Cao, DR O'day, HA Pliner, PD Kingsley, M Deng… - Science, 2020 - science.org
INTRODUCTION A reference atlas of human cell types is a major goal for the field. Here, we
set out to generate single-cell atlases of both gene expression (this study) and chromatin …

A human cell atlas of fetal chromatin accessibility

S Domcke, AJ Hill, RM Daza, J Cao, DR O'Day… - Science, 2020 - science.org
INTRODUCTION In recent years, the single-cell genomics field has made incredible
progress toward disentangling the cellular heterogeneity of human tissues. However, the …

A single-cell transcriptome atlas profiles early organogenesis in human embryos

Y Xu, T Zhang, Q Zhou, M Hu, Y Qi, Y Xue, Y Nie… - Nature cell …, 2023 - nature.com
The early window of human embryogenesis is largely a black box for developmental
biologists. Here we probed the cellular diversity of 4–6 week human embryos when …

[PDF][PDF] The pediatric cell atlas: defining the growth phase of human development at single-cell resolution

DM Taylor, BJ Aronow, K Tan, K Bernt, N Salomonis… - Developmental cell, 2019 - cell.com
Single-cell gene expression analyses of mammalian tissues have uncovered profound
stage-specific molecular regulatory phenomena that have changed the understanding of …

An atlas of rabbit development as a model for single-cell comparative genomics

MLN Ton, D Keitley, B Theeuwes, C Guibentif… - Nature Cell …, 2023 - nature.com
Traditionally, the mouse has been the favoured vertebrate model for biomedical research,
due to its experimental and genetic tractability. However, non-rodent embryological studies …

Clonal dynamics in early human embryogenesis inferred from somatic mutation

S Park, NM Mali, R Kim, JW Choi, J Lee, J Lim, JM Park… - Nature, 2021 - nature.com
Cellular dynamics and fate decision in early human embryogenesis remain largely unknown
owing to the challenges of performing studies in human embryos. Here, we explored whole …

[HTML][HTML] A roadmap for the human developmental cell atlas

M Haniffa, D Taylor, S Linnarsson, BJ Aronow… - Nature, 2021 - nature.com
Abstract The Human Developmental Cell Atlas (HDCA) initiative, which is part of the Human
Cell Atlas, aims to create a comprehensive reference map of cells during development. This …

[HTML][HTML] Single-cell RNA-seq analysis unveils a prevalent epithelial/mesenchymal hybrid state during mouse organogenesis

J Dong, Y Hu, X Fan, X Wu, Y Mao, B Hu, H Guo… - Genome biology, 2018 - Springer
Background Organogenesis is crucial for proper organ formation during mammalian
embryonic development. However, the similarities and shared features between different …

Mapping the developing human immune system across organs

C Suo, E Dann, I Goh, L Jardine, V Kleshchevnikov… - Science, 2022 - science.org
Single-cell genomics studies have decoded the immune cell composition of several human
prenatal organs but were limited in describing the developing immune system as a …

The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans

The Tabula Sapiens Consortium*, RC Jones… - Science, 2022 - science.org
Molecular characterization of cell types using single-cell transcriptome sequencing is
revolutionizing cell biology and enabling new insights into the physiology of human organs …