Growth phase‐dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome‐wide DNA microarray
Bacterial transcriptional networks are built on a hierarchy of regulators, on top of which lie
the components of the RNA polymerase (in particular the sigma factors) and the global …
the components of the RNA polymerase (in particular the sigma factors) and the global …
Analysis of regulatory networks in Pseudomonas aeruginosa by genomewide transcriptional profiling
AL Goodman, S Lory - Current opinion in microbiology, 2004 - Elsevier
Transcriptional profiling using DNA microarrays has proved to be a valuable tool for
dissecting bacterial adaptation to various environments, including human hosts. Analysis of …
dissecting bacterial adaptation to various environments, including human hosts. Analysis of …
Global transcriptional responses to osmotic, oxidative, and imipenem stress conditions in Pseudomonas putida
K Bojanovič, I D'Arrigo, KS Long - Applied and environmental …, 2017 - Am Soc Microbiol
Bacteria cope with and adapt to stress by modulating gene expression in response to
specific environmental cues. In this study, the transcriptional response of Pseudomonas …
specific environmental cues. In this study, the transcriptional response of Pseudomonas …
Machine-learning from Pseudomonas putida KT2440 transcriptomes reveals its transcriptional regulatory network
Bacterial gene expression is orchestrated by numerous transcription factors (TFs).
Elucidating how gene expression is regulated is fundamental to understanding bacterial …
Elucidating how gene expression is regulated is fundamental to understanding bacterial …
Genetic Evidence of Distinct Physiological Regulation Mechanisms in the ς54Pu Promoter ofPseudomonas putida
I Cases, V de Lorenzo - Journal of Bacteriology, 2000 - Am Soc Microbiol
The activity of the toluene-responsive ς54 Pu promoter of the pWW0 TOL plasmid of
Pseudomonas putida is down-regulated in vivo during exponential growth in rich medium …
Pseudomonas putida is down-regulated in vivo during exponential growth in rich medium …
Promoters in the environment: transcriptional regulation in its natural context
I Cases, V De Lorenzo - Nature Reviews Microbiology, 2005 - nature.com
Transcriptional activation of many bacterial promoters in their natural environment is not a
simple on/off decision. The expression of cognate genes is integrated in layers of iterative …
simple on/off decision. The expression of cognate genes is integrated in layers of iterative …
Mapping regulatory networks in microbial cells
RA VanBogelen, KD Greis, RM Blumenthal… - Trends in …, 1999 - cell.com
Genome sequences are the blueprints of diverse life forms but they reveal little information
about how cells make coherent responses to environmental changes. The combined use of …
about how cells make coherent responses to environmental changes. The combined use of …
Identifying global regulators in transcriptional regulatory networks in bacteria
A Martınez-Antonio, J Collado-Vides - Current opinion in microbiology, 2003 - Elsevier
The machinery for cells to take decisions, when environmental conditions change, includes
protein–DNA interactions defined by transcriptional factors and their targets around …
protein–DNA interactions defined by transcriptional factors and their targets around …
Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes
J Kim, JC Oliveros, PI Nikel… - Environmental …, 2013 - Wiley Online Library
P seudomonas putida KT 2440 is a metabolically versatile soil bacterium useful both as a
model biodegradative organism and as a host of catalytic activities of biotechnological …
model biodegradative organism and as a host of catalytic activities of biotechnological …
Microarray expression profiling: capturing a genome‐wide portrait of the transcriptome
T Conway, GK, Schoolnik - Molecular microbiology, 2003 - Wiley Online Library
The bacterial transcriptome is a dynamic entity that reflects the organism's immediate,
ongoing and genome‐wide response to its environment. Microarray expression profiling …
ongoing and genome‐wide response to its environment. Microarray expression profiling …