EvoMining reveals the origin and fate of natural product biosynthetic enzymes

N Sélem-Mojica, C Aguilar… - Microbial …, 2019 - microbiologyresearch.org
Natural products (NPs), or specialized metabolites, are important for medicine and
agriculture alike, and for the fitness of the organisms that produce them. NP genome-mining …

[HTML][HTML] The evolution of genome mining in microbes–a review

N Ziemert, M Alanjary, T Weber - Natural product reports, 2016 - pubs.rsc.org
Covering: 2006 to 2016 The computational mining of genomes has become an important
part in the discovery of novel natural products as drug leads. Thousands of bacterial …

A computational framework to explore large-scale biosynthetic diversity

JC Navarro-Muñoz, N Selem-Mojica… - Nature chemical …, 2020 - nature.com
Genome mining has become a key technology to exploit natural product diversity. Although
initially performed on a single-genome basis, the process is now being scaled up to mine …

Omics-based natural product discovery and the lexicon of genome mining

H Machado, RN Tuttle, PR Jensen - Current opinion in microbiology, 2017 - Elsevier
Highlights•A lexicon for biosynthetic gene clusters and the small molecules they
encode.•Omic approaches advance natural product discovery.•Knowledge gaps in the …

[HTML][HTML] Navigating and expanding the roadmap of natural product genome mining tools

F Biermann, SL Wenski… - Beilstein Journal of …, 2022 - beilstein-journals.org
Natural products are structurally highly diverse and exhibit a wide array of biological
activities. As a result, they serve as an important source of new drug leads. Traditionally …

Unveiling the genomic potential of Pseudomonas type strains for discovering new natural products

Z Saati-Santamaría, N Selem-Mojica… - Microbial …, 2022 - microbiologyresearch.org
Microbes host a huge variety of biosynthetic gene clusters that produce an immeasurable
array of secondary metabolites with many different biological activities such as antimicrobial …

Mining for microbial gems: integrating proteomics in the postgenomic natural product discovery pipeline

C Du, GP van Wezel - Proteomics, 2018 - Wiley Online Library
Natural products (NPs) are a major source of compounds for medical, agricultural, and
biotechnological industries. Many of these compounds are of microbial origin, and, in …

Integrated metabolomic–genomic workflows accelerate microbial natural product discovery

NE Avalon, AE Murray, BJ Baker - Analytical chemistry, 2022 - ACS Publications
The pairing of analytical chemistry with genomic techniques represents a new wave in
natural product chemistry. With an increase in the availability of sequencing and assembly of …

[HTML][HTML] The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity

N Ziemert, S Podell, K Penn, JH Badger, E Allen… - PloS one, 2012 - journals.plos.org
New bioinformatic tools are needed to analyze the growing volume of DNA sequence data.
This is especially true in the case of secondary metabolite biosynthesis, where the highly …

[HTML][HTML] Molecular beacons to identify gifted microbes for genome mining

RH Baltz - The Journal of antibiotics, 2017 - nature.com
Microbial genome mining is a promising technology that is revitalizing natural product
discovery. It is now well documented that many bacteria with large genomes, particularly …