EvoMining reveals the origin and fate of natural product biosynthetic enzymes
N Sélem-Mojica, C Aguilar… - Microbial …, 2019 - microbiologyresearch.org
Natural products (NPs), or specialized metabolites, are important for medicine and
agriculture alike, and for the fitness of the organisms that produce them. NP genome-mining …
agriculture alike, and for the fitness of the organisms that produce them. NP genome-mining …
[HTML][HTML] The evolution of genome mining in microbes–a review
Covering: 2006 to 2016 The computational mining of genomes has become an important
part in the discovery of novel natural products as drug leads. Thousands of bacterial …
part in the discovery of novel natural products as drug leads. Thousands of bacterial …
A computational framework to explore large-scale biosynthetic diversity
JC Navarro-Muñoz, N Selem-Mojica… - Nature chemical …, 2020 - nature.com
Genome mining has become a key technology to exploit natural product diversity. Although
initially performed on a single-genome basis, the process is now being scaled up to mine …
initially performed on a single-genome basis, the process is now being scaled up to mine …
Omics-based natural product discovery and the lexicon of genome mining
Highlights•A lexicon for biosynthetic gene clusters and the small molecules they
encode.•Omic approaches advance natural product discovery.•Knowledge gaps in the …
encode.•Omic approaches advance natural product discovery.•Knowledge gaps in the …
[HTML][HTML] Navigating and expanding the roadmap of natural product genome mining tools
F Biermann, SL Wenski… - Beilstein Journal of …, 2022 - beilstein-journals.org
Natural products are structurally highly diverse and exhibit a wide array of biological
activities. As a result, they serve as an important source of new drug leads. Traditionally …
activities. As a result, they serve as an important source of new drug leads. Traditionally …
Unveiling the genomic potential of Pseudomonas type strains for discovering new natural products
Z Saati-Santamaría, N Selem-Mojica… - Microbial …, 2022 - microbiologyresearch.org
Microbes host a huge variety of biosynthetic gene clusters that produce an immeasurable
array of secondary metabolites with many different biological activities such as antimicrobial …
array of secondary metabolites with many different biological activities such as antimicrobial …
Mining for microbial gems: integrating proteomics in the postgenomic natural product discovery pipeline
C Du, GP van Wezel - Proteomics, 2018 - Wiley Online Library
Natural products (NPs) are a major source of compounds for medical, agricultural, and
biotechnological industries. Many of these compounds are of microbial origin, and, in …
biotechnological industries. Many of these compounds are of microbial origin, and, in …
Integrated metabolomic–genomic workflows accelerate microbial natural product discovery
The pairing of analytical chemistry with genomic techniques represents a new wave in
natural product chemistry. With an increase in the availability of sequencing and assembly of …
natural product chemistry. With an increase in the availability of sequencing and assembly of …
[HTML][HTML] The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity
New bioinformatic tools are needed to analyze the growing volume of DNA sequence data.
This is especially true in the case of secondary metabolite biosynthesis, where the highly …
This is especially true in the case of secondary metabolite biosynthesis, where the highly …
[HTML][HTML] Molecular beacons to identify gifted microbes for genome mining
RH Baltz - The Journal of antibiotics, 2017 - nature.com
Microbial genome mining is a promising technology that is revitalizing natural product
discovery. It is now well documented that many bacteria with large genomes, particularly …
discovery. It is now well documented that many bacteria with large genomes, particularly …