CrispRVariants charts the mutation spectrum of genome engineering experiments

H Lindsay, A Burger, B Biyong, A Felker, C Hess… - Nature …, 2016 - nature.com
CRISPR-Cas9 and related technologies enable the efficient alteration of genomic DNA at
targeted positions and are widely used in applications ranging from individual gene …

Target-specific precision of CRISPR-mediated genome editing

AM Chakrabarti, T Henser-Brownhill, J Monserrat… - Molecular cell, 2019 - cell.com
The CRISPR-Cas9 system has successfully been adapted to edit the genome of various
organisms. However, our ability to predict the editing outcome at specific sites is limited …

CRIS. py: a versatile and high-throughput analysis program for CRISPR-based genome editing

JP Connelly, SM Pruett-Miller - Scientific reports, 2019 - nature.com
CRISPR-Cas9 technology allows the creation of user-defined genomic modifications in cells
and whole organisms. However, quantifying editing rates in pools of cells or identifying …

Off-target effects in CRISPR/Cas9-mediated genome engineering

XH Zhang, LY Tee, XG Wang, QS Huang… - … Therapy-Nucleic Acids, 2015 - cell.com
CRISPR/Cas9 is a versatile genome-editing technology that is widely used for studying the
functionality of genetic elements, creating genetically modified organisms as well as …

Paving the way towards precise and safe CRISPR genome editing

P Sledzinski, M Dabrowska, M Nowaczyk… - Biotechnology …, 2021 - Elsevier
As the possibilities of CRISPR-Cas9 technology have been revealed, we have entered a
new era of research aimed at increasing its specificity and safety. This stage of technology …

BATCH-GE: Batch analysis of Next-Generation Sequencing data for genome editing assessment

A Boel, W Steyaert, N De Rocker, B Menten… - Scientific reports, 2016 - nature.com
Targeted mutagenesis by the CRISPR/Cas9 system is currently revolutionizing genetics.
The ease of this technique has enabled genome engineering in-vitro and in a range of …

Resources for the design of CRISPR gene editing experiments

DB Graham, DE Root - Genome biology, 2015 - Springer
CRISPR-based approaches have quickly become a favored method to perturb genes to
uncover their functions. Here, we review the key considerations in the design of genome …

Methods for optimizing CRISPR-Cas9 genome editing specificity

J Tycko, VE Myer, PD Hsu - Molecular cell, 2016 - cell.com
Advances in the development of delivery, repair, and specificity strategies for the CRISPR-
Cas9 genome engineering toolbox are helping researchers understand gene function with …

New advances in CRISPR/Cas-mediated precise gene-editing techniques

C Richardson, RN Kelsh… - Disease Models & …, 2023 - journals.biologists.com
Over the past decade, CRISPR/Cas-based gene editing has become a powerful tool for
generating mutations in a variety of model organisms, from Escherichia coli to zebrafish …

Guidelines for optimized gene knockout using CRISPR/Cas9

CV Campenhout, P Cabochette, AC Veillard… - …, 2019 - Taylor & Francis
CRISPR/Cas9 technology has evolved as the most powerful approach to generate genetic
models both for fundamental and preclinical research. Despite its apparent simplicity, the …