A pangenome analysis pipeline provides insights into functional gene identification in rice
Background A pangenome aims to capture the complete genetic diversity within a species
and reduce bias in genetic analysis inherent in using a single reference genome. However …
and reduce bias in genetic analysis inherent in using a single reference genome. However …
Utilizing trait networks and structural equation models as tools to interpret multi-trait genome-wide association studies
Background Plant breeders seek to develop cultivars with maximal agronomic value, which
is often assessed using numerous, often genetically correlated traits. As intervention on one …
is often assessed using numerous, often genetically correlated traits. As intervention on one …
Development of gene-tagged markers for quantitative trait loci underlying rice yield components
CJ Yan, S Yan, YC Yang, XH Zeng, YW Fang, SY Zeng… - Euphytica, 2009 - Springer
Higher yields of rice have always been a predominant goal in rice breeding techniques.
However, the inheritances of rice yield and its components are still unknown, and no …
However, the inheritances of rice yield and its components are still unknown, and no …
Genetic variation and association mapping for 12 agronomic traits in indica rice
Q Lu, M Zhang, X Niu, S Wang, Q Xu, Y Feng, C Wang… - BMC genomics, 2015 - Springer
Abstract Background Increasing rice (Oryza sativa L.) yield is a crucial challenge for modern
agriculture. The ideal plant architecture is considered to be critical to enhance rice yield …
agriculture. The ideal plant architecture is considered to be critical to enhance rice yield …
[HTML][HTML] Genetic architecture of head rice and rice chalky grain percentages using genome-wide association studies
High head rice and low chalky grain percentages are key grain quality traits selected in
developing rice cultivars. The objectives of this research were to characterize the phenotypic …
developing rice cultivars. The objectives of this research were to characterize the phenotypic …
Transcriptome and genome sequencing elucidates the molecular basis for the high yield and good quality of the hybrid rice variety Chuanyou6203
J Ren, F Zhang, F Gao, L Zeng, X Lu, X Zhao, J Lv… - Scientific reports, 2020 - nature.com
The yield heterosis of rice is sought by farmers and strong contributes to food safety, but the
quality of hybrid rice may be reduced. Therefore, developing new varieties with both high …
quality of hybrid rice may be reduced. Therefore, developing new varieties with both high …
Genome wide screening and comparative genome analysis for Meta-QTLs, ortho-MQTLs and candidate genes controlling yield and yield-related traits in rice
Background Improving yield and yield-related traits is the crucial goal in breeding
programmes of cereals. Meta-QTL (MQTL) analysis discovers the most stable QTLs …
programmes of cereals. Meta-QTL (MQTL) analysis discovers the most stable QTLs …
Genotyping by sequencing of rice interspecific backcross inbred lines identifies QTLs for grain weight and grain length
Grain weight and grain length are the most stable components of rice yield and important
indicators of consumer preference. Considering the potentials of wild rice and to enhance …
indicators of consumer preference. Considering the potentials of wild rice and to enhance …
GWAS to spot candidate genes associated with grain quality traits in diverse rice accessions of North East India
Abstract Introduction North East (NE) India is the second centre for the origin of rice and is
enriched with a diverse collection of traditional rice accessions. These genotypes possess …
enriched with a diverse collection of traditional rice accessions. These genotypes possess …
Rice co-expression network analysis identifies gene modules associated with agronomic traits
Y Zhang, E Han, Y Peng, Y Wang, Y Wang… - Plant …, 2022 - academic.oup.com
Identifying trait-associated genes is critical for rice (Oryza sativa) improvement, which
usually relies on map-based cloning, quantitative trait locus analysis, or genome-wide …
usually relies on map-based cloning, quantitative trait locus analysis, or genome-wide …