Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
J Sperschneider, PN Dodds… - Molecular plant …, 2018 - Wiley Online Library
Plant‐pathogenic fungi secrete effector proteins to facilitate infection. We describe extensive
improvements to EffectorP, the first machine learning classifier for fungal effector prediction …
improvements to EffectorP, the first machine learning classifier for fungal effector prediction …
EffectorP: predicting fungal effector proteins from secretomes using machine learning
Eukaryotic filamentous plant pathogens secrete effector proteins that modulate the host cell
to facilitate infection. Computational effector candidate identification and subsequent …
to facilitate infection. Computational effector candidate identification and subsequent …
[HTML][HTML] Computational prediction of effector proteins in fungi: opportunities and challenges
Effector proteins are mostly secretory proteins that stimulate plant infection by manipulating
the host response. Identifying fungal effector proteins and understanding their function is of …
the host response. Identifying fungal effector proteins and understanding their function is of …
[HTML][HTML] Evaluation of secretion prediction highlights differing approaches needed for oomycete and fungal effectors
The steadily increasing number of sequenced fungal and oomycete genomes has enabled
detailed studies of how these eukaryotic microbes infect plants and cause devastating …
detailed studies of how these eukaryotic microbes infect plants and cause devastating …
EffectorP 3.0: prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
J Sperschneider, PN Dodds - Molecular plant-microbe …, 2022 - Am Phytopath Society
Many fungi and oomycete species are devasting plant pathogens. These eukaryotic
filamentous pathogens secrete effector proteins to facilitate plant infection. Fungi and …
filamentous pathogens secrete effector proteins to facilitate plant infection. Fungi and …
[HTML][HTML] Effector biology of biotrophic plant fungal pathogens: Current advances and future prospects
The interaction of fungal pathogens with their host requires a novel invading mechanism
and the presence of various virulence-associated components responsible for promoting the …
and the presence of various virulence-associated components responsible for promoting the …
Bioinformatic prediction of plant–pathogenicity effector proteins of fungi
Highlights•Review of current methods in fungal plant pathogenicity effector protein
prediction.•Recent advances have been made in structural and machine learning-based …
prediction.•Recent advances have been made in structural and machine learning-based …
[HTML][HTML] Advances and challenges in computational prediction of effectors from plant pathogenic fungi
Fungi occupy diverse environmental niches and many have evolved to live a pathogenic
lifestyle, causing devastating diseases in plants and animals. The interface between host …
lifestyle, causing devastating diseases in plants and animals. The interface between host …
[HTML][HTML] Prediction of effector protein structures from fungal phytopathogens enables evolutionary analyses
K Seong, KV Krasileva - Nature Microbiology, 2023 - nature.com
Elucidating the similarity and diversity of pathogen effectors is critical to understand their
evolution across fungal phytopathogens. However, rapid divergence that diminishes …
evolution across fungal phytopathogens. However, rapid divergence that diminishes …
In silico characterization and molecular evolutionary analysis of a novel superfamily of fungal effector proteins
Most fungal plant pathogens secrete effector proteins during pathogenesis to manipulate
their host's defense and promote disease. These are so highly diverse in sequence and …
their host's defense and promote disease. These are so highly diverse in sequence and …