[HTML][HTML] A compendium of chromatin contact maps reveals spatially active regions in the human genome
The three-dimensional configuration of DNA is integral to all nuclear processes in
eukaryotes, yet our knowledge of the chromosome architecture is still limited. Genome-wide …
eukaryotes, yet our knowledge of the chromosome architecture is still limited. Genome-wide …
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
Chromosome conformation capture approaches have shown that interphase chromatin is
partitioned into spatially segregated Mb-sized compartments and sub-Mb-sized topological …
partitioned into spatially segregated Mb-sized compartments and sub-Mb-sized topological …
Resolving the 3D landscape of transcription-linked mammalian chromatin folding
Whereas folding of genomes at the large scale of epigenomic compartments and
topologically associating domains (TADs) is now relatively well understood, how chromatin …
topologically associating domains (TADs) is now relatively well understood, how chromatin …
Principles of 3D compartmentalization of the human genome
MH Nichols, VG Corces - Cell reports, 2021 - cell.com
Chromatin is organized in the nucleus via CTCF loops and compartmental domains. Here,
we compare different cell types to identify distinct paradigms of compartmental domain …
we compare different cell types to identify distinct paradigms of compartmental domain …
[HTML][HTML] 4C-seq from beginning to end: A detailed protocol for sample preparation and data analysis
Chromosome conformation capture (3C) methods measure DNA contact frequencies based
on nuclear proximity ligation, to uncover in vivo genomic folding patterns. 4C–seq is a …
on nuclear proximity ligation, to uncover in vivo genomic folding patterns. 4C–seq is a …
Chromatin loops, gene positioning, and gene expression
S Holwerda, W Laat - Frontiers in genetics, 2012 - frontiersin.org
Technological developments and intense research over the last years have led to a better
understanding of the 3D structure of the genome and its influence on genome function …
understanding of the 3D structure of the genome and its influence on genome function …
CTCF and cohesin in genome folding and transcriptional gene regulation
M Merkenschlager, EP Nora - Annual review of genomics and …, 2016 - annualreviews.org
Genome function, replication, integrity, and propagation rely on the dynamic structural
organization of chromosomes during the cell cycle. Genome folding in interphase provides …
organization of chromosomes during the cell cycle. Genome folding in interphase provides …
Hi-TrAC reveals division of labor of transcription factors in organizing chromatin loops
The three-dimensional genomic structure plays a critical role in gene expression, cellular
differentiation, and pathological conditions. It is pivotal to elucidate fine-scale chromatin …
differentiation, and pathological conditions. It is pivotal to elucidate fine-scale chromatin …
Higher-order chromosomal structures mediate genome function
How chromosomes are organized within the tridimensional space of the nucleus and how
can this organization affect genome function have been long-standing questions on the path …
can this organization affect genome function have been long-standing questions on the path …
Loop stacking organizes genome folding from TADs to chromosomes
Although population-level analyses revealed significant roles for CTCF and cohesin in
mammalian genome organization, their contributions at the single-cell level remain …
mammalian genome organization, their contributions at the single-cell level remain …