A review of open-source image analysis tools for mammalian cell culture: algorithms, features and implementations
Cell culture is undeniably important for multiple scientific applications, including
pharmaceuticals, transplants, and cosmetics. However, cell culture involves multiple manual …
pharmaceuticals, transplants, and cosmetics. However, cell culture involves multiple manual …
Open source bioimage informatics for cell biology
JR Swedlow, KW Eliceiri - Trends in cell biology, 2009 - cell.com
Significant technical advances in imaging, molecular biology and genomics have fueled a
revolution in cell biology, in that the molecular and structural processes of the cell are now …
revolution in cell biology, in that the molecular and structural processes of the cell are now …
Synthetic images of high-throughput microscopy for validation of image analysis methods
A Lehmussola, P Ruusuvuori… - Proceedings of the …, 2008 - ieeexplore.ieee.org
Automated image analysis provides a powerful tool when quantifying various characteristics
of cell populations. Previously, the validation of image analysis results has been a task of …
of cell populations. Previously, the validation of image analysis results has been a task of …
Analysis of live cell images: Methods, tools and opportunities
Advances in optical microscopy, biosensors and cell culturing technologies have
transformed live cell imaging. Thanks to these advances live cell imaging plays an …
transformed live cell imaging. Thanks to these advances live cell imaging plays an …
CellTool: an open source software combining bio-image analysis and mathematical modeling
We present CellTool, a stand-alone open source software with a Graphical User Interface for
image analysis, optimized for measurement of time-lapse microscopy images. It combines …
image analysis, optimized for measurement of time-lapse microscopy images. It combines …
Review of cell image synthesis for image processing
Opposites attract, also in the biomedical field and during the processing of cell microscopy
images. In the same spirit, image processing, the indispensable analyst tool, is often …
images. In the same spirit, image processing, the indispensable analyst tool, is often …
“Tonga”: a novel toolbox for straightforward bioimage analysis
A Ritchie, S Laitinen, P Katajisto… - Frontiers in Computer …, 2022 - frontiersin.org
Techniques to acquire and analyze biological images are central to life science. However,
the workflow downstream of imaging can be complex and involve several tools, leading to …
the workflow downstream of imaging can be complex and involve several tools, leading to …
Computational framework for simulating fluorescence microscope images with cell populations
A Lehmussola, P Ruusuvuori… - IEEE transactions on …, 2007 - ieeexplore.ieee.org
Fluorescence microscopy combined with digital imaging constructs a basic platform for
numerous biomedical studies in the field of cellular imaging. As the studies relying on …
numerous biomedical studies in the field of cellular imaging. As the studies relying on …
CytoPacq: a web-interface for simulating multi-dimensional cell imaging
Motivation Objective assessment of bioimage analysis methods is an essential step towards
understanding their robustness and parameter sensitivity, calling for the availability of …
understanding their robustness and parameter sensitivity, calling for the availability of …
Open source tools for biological image analysis
Abstract Visiting the Bio Imaging Search Engine (BISE)(Bio, BISE, Engine, http://biii. eu/,
Imaging, Search) website at the time of writing this article, almost 1200 open source assets …
Imaging, Search) website at the time of writing this article, almost 1200 open source assets …