Origin and fate of pseudogenes in Hemiascomycetes: a comparative analysis

I Lafontaine, B Dujon - BMC genomics, 2010 - Springer
Background Pseudogenes are ubiquitous genetic elements that derive from functional
genes after mutational inactivation. Characterization of pseudogenes is important to …

[HTML][HTML] Genomic exploration of the hemiascomycetous yeasts: 3. Methods and strategies used for sequence analysis and annotation

F Tekaia, G Blandin, A Malpertuy, B Llorente… - Febs Letters, 2000 - Elsevier
The primary analysis of the sequences for our Hemiascomycete random sequence tag
(RST) project was performed using a combination of classical methods for sequence …

[HTML][HTML] Ectopic gene conversions in the genome of ten hemiascomycete yeast species

RT Morris, G Drouin - International journal of evolutionary biology, 2011 - hindawi.com
We characterized ectopic gene conversions in the genome of ten hemiascomycete yeast
species. Of the ten species, three diverged prior to the whole genome duplication (WGD) …

Genomic exploration of the hemiascomycetous yeasts: 19. Ascomycetes‐specific genes

A Malpertuy, F Tekaia, S Casarégola, M Aigle… - FEBS …, 2000 - Wiley Online Library
Comparisons of the 6213 predicted Saccharomyces cerevisiae open reading frame (ORF)
products with sequences from organisms of other biological phyla differentiate genes …

Genomic exploration of the hemiascomycetous yeasts: 21. Comparative functional classification of genes

C Gaillardin, G Duchateau-Nguyen, F Tekaia… - FEBS …, 2000 - Wiley Online Library
We explored the biological diversity of hemiascomycetous yeasts using a set of 22 000
newly identified genes in 13 species through BLASTX searches. Genes without clear …

Hemiascomycetous yeasts at the forefront of comparative genomics

B Dujon - Current opinion in genetics & development, 2005 - Elsevier
With more than a dozen species fully sequenced, as many as this partially sequenced, and
more in development, yeasts are now used to explore the frontlines of comparative …

Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution

B Dujon - TRENDS in Genetics, 2006 - cell.com
Hemiascomycetous yeasts have the greatest number of sequenced species for a single
phylum, and are at the forefront of evolutionary genomics of eukaryotes. Yeast genomes …

[HTML][HTML] Genomic exploration of the hemiascomycetous yeasts: 13. Pichia angusta

G Blandin, B Llorente, A Malpertuy, P Wincker… - FEBS letters, 2000 - Elsevier
As part of a comparative genomics project on 13 hemiascomycetous yeasts, the Pichia
angusta type strain was studied using a partial random sequencing strategy. With coverage …

Comparative genomics and genome evolution in yeasts

KH Wolfe - … Transactions of the Royal Society B …, 2006 - royalsocietypublishing.org
Yeasts provide a powerful model system for comparative genomics research. The
availability of multiple complete genome sequences from different fungal groups—currently …

Pseudogenization in pathogenic fungi with different host plants and lifestyles might reflect their evolutionary past

A van der Burgt, M Karimi Jashni… - Molecular plant …, 2014 - Wiley Online Library
Pseudogenes are genes with significant homology to functional genes, but contain
disruptive mutations (DMs) leading to the production of non‐or partially functional proteins …