Genome-wide CRISPR/Cas9 screening for high-throughput functional genomics in human cells

S Zhu, Y Zhou, W Wei - Innate Antiviral Immunity: Methods and Protocols, 2017 - Springer
It is highly desirable to identify gene's function in a high-throughput fashion, and the
CRISPR/Cas9 system has been harnessed to meet such a need. Here, we describe a …

Genome-wide recessive genetic screening in mammalian cells with a lentiviral CRISPR-guide RNA library

H Koike-Yusa, Y Li, EP Tan… - Nature …, 2014 - nature.com
Identification of genes influencing a phenotype of interest is frequently achieved through
genetic screening by RNA interference (RNAi) or knockouts. However, RNAi may only …

Practical considerations for using pooled lentiviral CRISPR libraries

JR McDade, NC Waxmonsky… - Current Protocols in …, 2016 - Wiley Online Library
CRISPR/Cas9 technology is ideally suited for genome‐wide screening applications due to
the ease of generating guide RNAs (gRNAs) and the versatility of Cas9 or Cas9 derivatives …

Genome-scale CRISPR-Cas9 knockout and transcriptional activation screening

J Joung, S Konermann, JS Gootenberg… - Nature protocols, 2017 - nature.com
Forward genetic screens are powerful tools for the unbiased discovery and functional
characterization of specific genetic elements associated with a phenotype of interest …

Validation of synthetic CRISPR reagents as a tool for arrayed functional genomic screening

J Tan, SE Martin - PloS one, 2016 - journals.plos.org
To date, lentiviral-based CRISPR-Cas9 screens have largely been conducted in pooled
format. However, numerous assays are not amenable to pooled approaches, and lentiviral …

Large-scale single guide RNA library construction and use for CRISPR–Cas9-based genetic screens

T Wang, ES Lander… - Cold Spring Harbor …, 2016 - cshprotocols.cshlp.org
The ability to systematically disrupt genes serves as a powerful tool for understanding their
function. The programmable CRISPR–Cas9 system enables efficient targeting of large …

Genome-scale CRISPR screening at high sensitivity with an empirically designed sgRNA library

L Henkel, B Rauscher, B Schmitt, J Winter, M Boutros - BMC biology, 2020 - Springer
Background In recent years, large-scale genetic screens using the CRISPR/Cas9 system
have emerged as scalable approaches able to interrogate gene function with …

Pooled lentiviral CRISPR-Cas9 screens for functional genomics in mammalian cells

M Aregger, M Chandrashekhar, AHY Tong… - Brain Tumor Stem Cells …, 2019 - Springer
CRISPR-Cas9 technology provides a simple way to introduce targeted mutations into
mammalian cells to induce loss-of-function phenotypes. The CRISPR-Cas9 system has now …

[HTML][HTML] Protocol for in vivo CRISPR screening using selective CRISPR antigen removal lentiviral vectors

SK Lane-Reticker, EA Kessler, AJ Muscato, SY Kim… - STAR protocols, 2023 - Elsevier
Recognition of Cas9 and other proteins encoded in delivery vectors has limited CRISPR
technology in vivo. Here, we present a protocol for genome engineering using selective …

Unraveling CRISPR-Cas9 genome engineering parameters via a library-on-library approach

R Chari, P Mali, M Moosburner, GM Church - Nature methods, 2015 - nature.com
We developed an in vivo library-on-library methodology to simultaneously assess single
guide RNA (sgRNA) activity across∼ 1,400 genomic loci. Assaying across multiple human …