[HTML][HTML] On the use of whole-genome sequence data for across-breed genomic prediction and fine-scale mapping of QTL
T Meuwissen, I van den Berg, M Goddard - Genetics Selection Evolution, 2021 - Springer
Background Whole-genome sequence (WGS) data are increasingly available on large
numbers of individuals in animal and plant breeding and in human genetics through second …
numbers of individuals in animal and plant breeding and in human genetics through second …
Application of support vector regression to genome-assisted prediction of quantitative traits
A byproduct of genome-wide association studies is the possibility of carrying out genome-
enabled prediction of disease risk or of quantitative traits. This study is concerned with …
enabled prediction of disease risk or of quantitative traits. This study is concerned with …
[HTML][HTML] Improved precision of QTL mapping using a nonlinear Bayesian method in a multi-breed population leads to greater accuracy of across-breed genomic …
Background Genomic selection is increasingly widely practised, particularly in dairy cattle.
However, the accuracy of current predictions using GBLUP (genomic best linear unbiased …
However, the accuracy of current predictions using GBLUP (genomic best linear unbiased …
Joint use of genome, pedigree, and their interaction with environment for predicting the performance of wheat lines in new environments
Genome-enabled prediction plays an essential role in wheat breeding because it has the
potential to increase the rate of genetic gain relative to traditional phenotypic and pedigree …
potential to increase the rate of genetic gain relative to traditional phenotypic and pedigree …
[HTML][HTML] Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels
M Erbe, BJ Hayes, LK Matukumalli, S Goswami… - Journal of dairy …, 2012 - Elsevier
Achieving accurate genomic estimated breeding values for dairy cattle requires a very large
reference population of genotyped and phenotyped individuals. Assembling such reference …
reference population of genotyped and phenotyped individuals. Assembling such reference …
L2,1-norm regularized multivariate regression model with applications to genomic prediction
Motivation Genomic selection (GS) is currently deemed the most effective approach to speed
up breeding of agricultural varieties. It has been recognized that consideration of multiple …
up breeding of agricultural varieties. It has been recognized that consideration of multiple …
[PDF][PDF] BLUPF90 suite of programs for animal breeding with focus on genomics
The BLUPF90 suite is a collection of software for mixed-model analysis with focus on
breeding and genetics applications. Solving of mixed model equations and variance …
breeding and genetics applications. Solving of mixed model equations and variance …
[HTML][HTML] Weighting strategies for single-step genomic BLUP: an iterative approach for accurate calculation of GEBV and GWAS
Genomic Best Linear Unbiased Predictor (GBLUP) assumes equal variance for all single
nucleotide polymorphisms (SNP). When traits are influenced by major SNP, Bayesian …
nucleotide polymorphisms (SNP). When traits are influenced by major SNP, Bayesian …
[HTML][HTML] Evaluation of an ensemble of genetic models for prediction of a quantitative trait
Many genetic markers have been shown to be associated with common quantitative traits in
genome-wide association studies. Typically these associated genetic markers have small to …
genome-wide association studies. Typically these associated genetic markers have small to …
[HTML][HTML] Evaluation of approaches for estimating the accuracy of genomic prediction in plant breeding
SB Ould Estaghvirou, JO Ogutu, T Schulz-Streeck… - BMC genomics, 2013 - Springer
Background In genomic prediction, an important measure of accuracy is the correlation
between the predicted and the true breeding values. Direct computation of this quantity for …
between the predicted and the true breeding values. Direct computation of this quantity for …