The artificially generated microbiome: A study on the generation and potential use cases of predicted meta-omics data

B Cosma - 2024 - repository.tudelft.nl
Motivation: Imbalances in the human gut microbiome have been linked to various
conditions, including inflammatory bowel disease (IBD), diabetes, and mental health …

[HTML][HTML] Gut microbes meet machine learning: the next step towards advancing our understanding of the gut microbiome in health and disease

M Giuffrè, R Moretti, C Tiribelli - International Journal of Molecular …, 2023 - mdpi.com
The human gut microbiome plays a crucial role in human health and has been a focus of
increasing research in recent years. Omics-based methods, such as metagenomics …

Predictive networks for multi meta-omics data integration

A Zandonà - 2017 - iris.unitn.it
The role of microbiome in disease onset and in equilibrium is being exposed by a wealth of
high-throughput omics methods. All key research directions, eg, the study of gut microbiome …

[HTML][HTML] Machine learning for data integration in human gut microbiome

P Li, H Luo, B Ji, J Nielsen - Microbial Cell Factories, 2022 - Springer
Recent studies have demonstrated that gut microbiota plays critical roles in various human
diseases. High-throughput technology has been widely applied to characterize the microbial …

Gene-based microbiome representation enhances host phenotype classification

T Deschênes, FWE Tohoundjona, PL Plante… - Msystems, 2023 - Am Soc Microbiol
With the concomitant advances in both the microbiome and machine learning fields, the gut
microbiome has become of great interest for the potential discovery of biomarkers to be used …

The Potential of Microbiome Big Data in Precision Medicine: Predicting Outcomes Through Machine Learning

S Turroni, S Rampelli - Big Data Analysis and Artificial …, 2024 - Wiley Online Library
Massive sequencing techniques for compositional and functional profiling of the gut
microbiome, a key modifier of human health, are generating thousands of data that are well …

[HTML][HTML] MiMeNet: Exploring microbiome-metabolome relationships using neural networks

D Reiman, BT Layden, Y Dai - PLoS computational biology, 2021 - journals.plos.org
The advance in microbiome and metabolome studies has generated rich omics data
revealing the involvement of the microbial community in host disease pathogenesis through …

[HTML][HTML] A meta-analysis study of the robustness and universality of gut microbiome-metabolome associations

E Muller, YM Algavi, E Borenstein - Microbiome, 2021 - Springer
Background Microbiome-metabolome studies of the human gut have been gaining
popularity in recent years, mostly due to accumulating evidence of the interplay between gut …

Predicting metabolomic profiles from microbial composition through neural ordinary differential equations

T Wang, XW Wang, KA Lee-Sarwar… - Nature machine …, 2023 - nature.com
Characterizing the metabolic profile of a microbial community is crucial for understanding its
biological function and its impact on the host or environment. Metabolomics experiments …

[HTML][HTML] Multi-omics approaches to studying gastrointestinal microbiome in the context of precision medicine and machine learning

J Wu, SS Singleton, U Bhuiyan, L Krammer… - Frontiers in molecular …, 2024 - frontiersin.org
The human gastrointestinal (gut) microbiome plays a critical role in maintaining host health
and has been increasingly recognized as an important factor in precision medicine. High …