Spatiotemporal miRNA and transcriptomic network dynamically regulate the developmental and senescence processes of poplar leaves

K Du, S Jiang, H Chen, Y Xia, R Guo, A Ling… - Horticulture …, 2023 - academic.oup.com
Poplar is an important afforestation and urban greening species. Poplar leaf development
occurs in stages, from young to mature and then from mature to senescent; these are …

Integrated Analysis of miRNAome and Transcriptome Identify Regulators of Elm Seed Aging

T Ye, X Huang, T Ma, Y Li, X Wang, H Lu, H Xue - Plants, 2023 - mdpi.com
After maturity, seed vigor irreversibly decreases. Understanding the underlying mechanism
is important to germplasm preservation. MicroRNAs (miRNAs) play vital regulatory roles in …

Transcriptomic Insights Into Root Development and Overwintering Transcriptional Memory of Brassica rapa L. Grown in the Field

L Liu, Y Pu, Z Niu, J Wu, Y Fang, J Xu, F Xu… - Frontiers in Plant …, 2022 - frontiersin.org
As the only overwintering oil crop in the north area of China, living through winter is the
primary feature of winter rapeseed. Roots are the only survival organ during prolonged cold …

A cross-species transcriptomics approach to identify genes involved in leaf development

NR Street, A Sjödin, M Bylesjö, P Gustafsson, J Trygg… - Bmc Genomics, 2008 - Springer
Background We have made use of publicly available gene expression data to identify
transcription factors and transcriptional modules (regulons) associated with leaf …

Synonymous mutation in Growth Regulating Factor 15 of miR396a target sites enhances photosynthetic efficiency and heat tolerance in poplar

Y Zhao, J Xie, S Wang, W Xu, S Chen… - Journal of …, 2021 - academic.oup.com
Heat stress damages plant tissues and induces multiple adaptive responses. Complex and
spatiotemporally specific interactions among transcription factors (TFs), microRNAs …

[HTML][HTML] Transcriptome analysis uncovering regulatory networks and hub genes of Populus photosynthesis and chlorophyll content

K Du, W Wu, T Liao, J Yang, X Kang - Genomics, 2022 - Elsevier
Photosynthesis plays vital role in plant growth and development throughout its life, and it is
influenced by environmental signals and circadian rhythms. We analyzed the transcriptome …

Genome-wide identification of vegetative phase transition-associated microRNAs and target predictions using degradome sequencing in Malus hupehensis

L Xing, D Zhang, Y Li, C Zhao, S Zhang, Y Shen, N An… - BMC genomics, 2014 - Springer
Background A long juvenile period between germination and flowering is a common
characteristic among fruit trees, including Malus hupehensis (Pamp.) Rehd., which is an …

Integration of small RNAs and transcriptome sequencing uncovers a complex regulatory network during vernalization and heading stages of orchardgrass (Dactylis …

G Feng, L Xu, J Wang, G Nie, BS Bushman, W Xie… - BMC genomics, 2018 - Springer
Background Flowering is a critical reproductive process in higher plants. Timing of optimal
flowering depends upon the coordination among seasonal environmental cues. For cool …

Identification of bolting-related microRNAs and their targets reveals complex miRNA-mediated flowering-time regulatory networks in radish (Raphanus sativus L.)

S Nie, L Xu, Y Wang, D Huang, EM Muleke, X Sun… - Scientific reports, 2015 - nature.com
MicroRNAs (miRNAs) play vital regulatory roles in plant growth and development. The
phase transition from vegetative growth to flowering is crucial in the life cycle of plants. To …

Deep sequencing on a genome-wide scale reveals diverse stage-specific microRNAs in cambium during dormancy-release induced by chilling in poplar

Q Ding, J Zeng, XQ He - BMC plant biology, 2014 - Springer
Background Trees in temperate zones show periodicity by alternating active and dormant
states to adapt to environmental conditions. Although phytohormones and transcriptional …