[HTML][HTML] Protein-altering variants at copy number-variable regions influence diverse human phenotypes

MLA Hujoel, RE Handsaker, MA Sherman… - Nature Genetics, 2024 - nature.com
Copy number variants (CNVs) are among the largest genetic variants, yet CNVs have not
been effectively ascertained in most genetic association studies. Here we ascertained …

The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes

SB Montgomery, DL Goode, E Kvikstad… - Genome …, 2013 - genome.cshlp.org
Short insertions and deletions (indels) are the second most abundant form of human genetic
variation, but our understanding of their origins and functional effects lags behind that of …

Variation is the spice of life

L Kruglyak, DA Nickerson - Nature genetics, 2001 - nature.com
Assembling a comprehensive catalog of common human sequence polymorphisms is a key
goal of the Human Genome Project. The International SNP Map Working Group has …

Common deletion polymorphisms in the human genome

SA McCarroll, TN Hadnott, GH Perry, PC Sabeti… - Nature …, 2006 - nature.com
The locations and properties of common deletion variants in the human genome are largely
unknown. We describe a systematic method for using dense SNP genotype data to discover …

[HTML][HTML] Analysis of protein-coding genetic variation in 60,706 humans

M Lek, KJ Karczewski, EV Minikel, KE Samocha… - Nature, 2016 - nature.com
Large-scale reference data sets of human genetic variation are critical for the medical and
functional interpretation of DNA sequence changes. Here we describe the aggregation and …

Understanding human disease mutations through the use of interspecific genetic variation

MP Miller, S Kumar - Human molecular genetics, 2001 - academic.oup.com
Data on replacement mutations in genes of disease patients exist in a variety of online
resources. In addition, genome sequencing projects and individual gene sequencing efforts …

Nucleotide frequency variation across human genes

E Louie, J Ott, J Majewski - Genome research, 2003 - genome.cshlp.org
The frequencies of individual nucleotides exhibit significant fluctuations across eukaryotic
genes. In this paper, we investigate nucleotide variation across an averaged representation …

How next-generation sequencing is transforming complex disease genetics

H Kilpinen, JC Barrett - Trends in Genetics, 2013 - cell.com
Progress in understanding the genetics of human disease is closely tied to technological
developments in DNA sequencing. Recently, next-generation technology has transformed …

An expanded sequence context model broadly explains variability in polymorphism levels across the human genome

V Aggarwala, BF Voight - Nature genetics, 2016 - nature.com
The rate of single-nucleotide polymorphism varies substantially across the human genome
and fundamentally influences evolution and incidence of genetic disease. Previous studies …

[HTML][HTML] Impacts of variation in the human genome on gene regulation

RR Haraksingh, MP Snyder - Journal of molecular biology, 2013 - Elsevier
Recent advances in fast and inexpensive DNA sequencing have enabled the extensive
study of genomic and transcriptomic variation in humans. Human genomic variation is …