Human genome sequence variation and the influence of gene history, mutation and recombination

DE Reich, SF Schaffner, MJ Daly, G McVean… - Nature …, 2002 - nature.com
Variation in the human genome sequence is key to understanding susceptibility to disease
in modern populations and the history of ancestral populations. Unlocking this information …

Evidence for large inversion polymorphisms in the human genome from HapMap data

V Bansal, A Bashir, V Bafna - Genome research, 2007 - genome.cshlp.org
Knowledge about structural variation in the human genome has grown tremendously in the
past few years. However, inversions represent a class of structural variation that remains …

[HTML][HTML] A global reference for human genetic variation

1000 Genomes Project Consortium - Nature, 2015 - ncbi.nlm.nih.gov
Abstract The 1000 Genomes Project set out to provide a comprehensive description of
common human genetic variation by applying whole-genome sequencing to a diverse set of …

Detection of large-scale variation in the human genome

AJ Iafrate, L Feuk, MN Rivera, ML Listewnik… - Nature …, 2004 - nature.com
We identified 255 loci across the human genome that contain genomic imbalances among
unrelated individuals. Twenty-four variants are present in> 10% of the individuals that we …

Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes

F Hormozdiari, C Alkan, EE Eichler… - Genome …, 2009 - genome.cshlp.org
Recent studies show that along with single nucleotide polymorphisms and small indels,
larger structural variants among human individuals are common. The Human Genome …

[HTML][HTML] Comprehensive analysis of constraint on the spatial distribution of missense variants in human protein structures

RM Sivley, X Dou, J Meiler, WS Bush… - The American Journal of …, 2018 - cell.com
The spatial distribution of genetic variation within proteins is shaped by evolutionary
constraint and provides insight into the functional importance of protein regions and the …

[HTML][HTML] A 25-year odyssey of genomic technology advances and structural variant discovery

D Porubsky, EE Eichler - Cell, 2024 - cell.com
This perspective focuses on advances in genome technology over the last 25 years and
their impact on germline variant discovery within the field of human genetics. The field has …

Pathogenic variants that alter protein code often disrupt splicing

R Soemedi, KJ Cygan, CL Rhine, J Wang, C Bulacan… - Nature …, 2017 - nature.com
The lack of tools to identify causative variants from sequencing data greatly limits the
promise of precision medicine. Previous studies suggest that one-third of disease …

Identification of cis-suppression of human disease mutations by comparative genomics

DM Jordan, SG Frangakis, C Golzio, CA Cassa… - Nature, 2015 - nature.com
Patterns of amino acid conservation have served as a tool for understanding protein
evolution. The same principles have also found broad application in human genomics …

ClinVar: public archive of relationships among sequence variation and human phenotype

MJ Landrum, JM Lee, GR Riley, W Jang… - Nucleic acids …, 2014 - academic.oup.com
Abstract ClinVar (http://www. ncbi. nlm. nih. gov/clinvar/) provides a freely available archive
of reports of relationships among medically important variants and phenotypes. ClinVar …