Capturing the latent space of an Autoencoder for multi-omics integration and cancer subtyping
S Paul - Computers in Biology and Medicine, 2022 - Elsevier
Abstract Background and Objective: The motivation behind cancer subtyping is to identify
subgroups of cancer patients with distinguishable phenotypes of clinical importance. It can …
subgroups of cancer patients with distinguishable phenotypes of clinical importance. It can …
Deep structure integrative representation of multi-omics data for cancer subtyping
B Yang, Y Yang, X Su - Bioinformatics, 2022 - academic.oup.com
Motivation Cancer is a heterogeneous group of diseases. Cancer subtyping is a crucial and
critical step to diagnosis, prognosis and treatment. Since high-throughput sequencing …
critical step to diagnosis, prognosis and treatment. Since high-throughput sequencing …
Subtype-GAN: a deep learning approach for integrative cancer subtyping of multi-omics data
Motivation The discovery of cancer subtyping can help explore cancer pathogenesis,
determine clinical actionability in treatment, and improve patients' survival rates. However …
determine clinical actionability in treatment, and improve patients' survival rates. However …
Performance comparison of deep learning autoencoders for cancer subtype detection using multi-omics data
Simple Summary Here, we compared the performance of four different autoencoders:(a)
vanilla,(b) sparse,(c) denoising, and (d) variational for subtype detection on four cancer …
vanilla,(b) sparse,(c) denoising, and (d) variational for subtype detection on four cancer …
Subtype-WESLR: identifying cancer subtype with weighted ensemble sparse latent representation of multi-view data
The discovery of cancer subtypes has become much-researched topic in oncology. Dividing
cancer patients into subtypes can provide personalized treatments for heterogeneous …
cancer patients into subtypes can provide personalized treatments for heterogeneous …
SADLN: Self-attention based deep learning network of integrating multi-omics data for cancer subtype recognition
Q Sun, L Cheng, A Meng, S Ge, J Chen, L Zhang… - Frontiers in …, 2023 - frontiersin.org
Integrating multi-omics data for cancer subtype recognition is an important task in
bioinformatics. Recently, deep learning has been applied to recognize the subtype of …
bioinformatics. Recently, deep learning has been applied to recognize the subtype of …
Subtype-DCC: decoupled contrastive clustering method for cancer subtype identification based on multi-omics data
J Zhao, B Zhao, X Song, C Lyu, W Chen… - Briefings in …, 2023 - academic.oup.com
Due to the high heterogeneity and complexity of cancers, patients with different cancer
subtypes often have distinct groups of genomic and clinical characteristics. Therefore, the …
subtypes often have distinct groups of genomic and clinical characteristics. Therefore, the …
[HTML][HTML] MOCSS: Multi-omics data clustering and cancer subtyping via shared and specific representation learning
Y Chen, Y Wen, C Xie, X Chen, S He, X Bo, Z Zhang - Iscience, 2023 - cell.com
Cancer is an extremely complex disease and each type of cancer usually has several
different subtypes. Multi-omics data can provide more comprehensive biological information …
different subtypes. Multi-omics data can provide more comprehensive biological information …
A hierarchical integration deep flexible neural forest framework for cancer subtype classification by integrating multi-omics data
Background Cancer subtype classification attains the great importance for accurate
diagnosis and personalized treatment of cancer. Latest developments in high-throughput …
diagnosis and personalized treatment of cancer. Latest developments in high-throughput …
Multi-omics clustering for cancer subtyping based on latent subspace learning
The increased availability of high-throughput technologies has enabled biomedical
researchers to learn about disease etiology across multiple omics layers, which shows …
researchers to learn about disease etiology across multiple omics layers, which shows …