[HTML][HTML] Gene Family Expansion during the Adaptation of Colletotrichum gloeosporioides to Woody Plants

F Meng, C Tian - Journal of Fungi, 2023 - mdpi.com
Gene gains/losses during evolution are critical for the adaptation of organisms to new
environments or hosts. However, it remains unknown whether gene family expansions …

Pathogen enrichment sequencing (PenSeq) enables population genomic studies in oomycetes

GJA Thilliez, MR Armstrong, TY Lim, K Baker… - New …, 2019 - Wiley Online Library
The oomycete pathogens Phytophthora infestans and P. capsici cause significant crop
losses world‐wide, threatening food security. In each case, pathogenicity factors, called …

Alternaria comparative genomics: The secret life of rots

HX Dang, CB Lawrence - Genomics of plant-associated fungi and …, 2014 - Springer
The “rots” are among the most destructive plant diseases caused by necrotrophic fungi.
Toxins and hydrolytic enzymes secreted by these pathogens inflict tissue damage and/or …

Phaseolus vulgaris-Colletotrichum lindemuthianum Pathosystem in the Post-Genomic Era: An Update

A Nabi, I Lateef, Q Nisa, A Banoo, RS Rasool… - Current …, 2022 - Springer
Phaseolus vulgaris—Colletotrichum lindemuthianum is one among the oldest host and
pathogen interface. Researchers have taken painstaking efforts across the world for …

Global population genomics of the forest pathogen Dothistroma septosporum reveal chromosome duplications in high dothistromin‐producing strains

RE Bradshaw, AD Sim, P Chettri… - Molecular plant …, 2019 - Wiley Online Library
Dothistroma needle blight is one of the most devastating pine tree diseases worldwide. New
and emerging epidemics have been frequent over the last 25 years, particularly in the …

A phylogenomic analysis of the Ascomycota

B Robbertse, JB Reeves, CL Schoch… - Fungal genetics and …, 2006 - Elsevier
An automated procedure was developed to extract orthologous sequences from fungal
genomes and incorporate them into phylogenomic analyses in a timely and efficient manner …

Evolution, selection and isolation: a genomic view of speciation in fungal plant pathogens

EH Stukenbrock - New Phytologist, 2013 - Wiley Online Library
Speciation of fungal plant pathogens has been associated with host jumps, host
domestication, clonal divergence, and hybridization. Although we have substantial insight …

Genomic insights into the evolution and adaptation of secondary metabolite gene clusters in fungicolous species Cladobotryum mycophilum ATHUM6906

AC Christinaki, AI Myridakis… - G3: Genes, Genomes …, 2024 - academic.oup.com
Mycophilic or fungicolous fungi can be found wherever fungi exist since they are able to
colonize other fungi, which occupy a diverse range of habitats. Some fungicolous species …

Genome Evolution in Fungal Plant Pathogens: From Populations

U Oggenfuss, A Feurtey, CS Reyes-Avila… - Evolution of Fungi and … - Springer
Plant pathogenic fungi have emerged as major concerns for plant health in agriculture and
occupy important niches in natural ecosystems. Pathogen species are often highly diverse …

Introduction: overview of fungal genomics

RP de Vries, IV Grigoriev, A Tsang - Fungal Genomics: Methods and …, 2018 - Springer
Genome sequences and postgenomic tools have had a major impact on fungal research.
When the first fungal genome sequences became available it became clear how much more …