[HTML][HTML] Fast automated cell phenotype image classification

NA Hamilton, RS Pantelic, K Hanson, RD Teasdale - BMC bioinformatics, 2007 - Springer
Background The genomic revolution has led to rapid growth in sequencing of genes and
proteins, and attention is now turning to the function of the encoded proteins. In this respect …

Machine learning and computer vision approaches for phenotypic profiling

BT Grys, DS Lo, N Sahin, OZ Kraus, Q Morris… - Journal of Cell …, 2017 - rupress.org
With recent advances in high-throughput, automated microscopy, there has been an
increased demand for effective computational strategies to analyze large-scale, image …

[HTML][HTML] Phenotypic image analysis software tools for exploring and understanding big image data from cell-based assays

K Smith, F Piccinini, T Balassa, K Koos, T Danka… - Cell systems, 2018 - cell.com
Phenotypic image analysis is the task of recognizing variations in cell properties using
microscopic image data. These variations, produced through a complex web of interactions …

A reliable method for cell phenotype image classification

L Nanni, A Lumini - Artificial intelligence in medicine, 2008 - Elsevier
OBJECTIVE: Image-based approaches have proven to be of great utility in the automated
cell phenotype classification, it is very important to develop a method that efficiently …

Large‐scale image‐based screening and profiling of cellular phenotypes

N Bougen‐Zhukov, SY Loh, HK Lee, LH Loo - Cytometry Part A, 2017 - Wiley Online Library
Cellular phenotypes are observable characteristics of cells resulting from the interactions of
intrinsic and extrinsic chemical or biochemical factors. Image‐based phenotypic screens …

Robust numerical features for description and classification of subcellular location patterns in fluorescence microscope images

RF Murphy, M Velliste, G Porreca - … of VLSI signal processing systems for …, 2003 - Springer
The ongoing biotechnology revolution promises a complete understanding of the
mechanisms by which cells and tissues carry out their functions. Central to that goal is the …

A multi-scale convolutional neural network for phenotyping high-content cellular images

WJ Godinez, I Hossain, SE Lazic, JW Davies… - …, 2017 - academic.oup.com
Motivation Identifying phenotypes based on high-content cellular images is challenging.
Conventional image analysis pipelines for phenotype identification comprise multiple …

Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning

TR Jones, AE Carpenter… - Proceedings of the …, 2009 - National Acad Sciences
Many biological pathways were first uncovered by identifying mutants with visible
phenotypes and by scoring every sample in a screen via tedious and subjective visual …

Automated interpretation of subcellular patterns in fluorescence microscope images for location proteomics

X Chen, M Velliste, RF Murphy - … Part A: The Journal of the …, 2006 - Wiley Online Library
Proteomics, the large scale identification and characterization of many or all proteins
expressed in a given cell type, has become a major area of biological research. In addition …

[HTML][HTML] A multiresolution approach to automated classification of protein subcellular location images

A Chebira, Y Barbotin, C Jackson, T Merryman… - BMC …, 2007 - Springer
Background Fluorescence microscopy is widely used to determine the subcellular location
of proteins. Efforts to determine location on a proteome-wide basis create a need for …