Deep Transcriptomics Reveals Cell-Specific Isoforms of Pan-Neuronal Genes

Z Wolfe, D Liska, AD Norris - bioRxiv, 2024 - biorxiv.org
Profiling gene expression in single neurons using single-cell RNA-Seq is a powerful method
for understanding the molecular diversity of the nervous system. Profiling alternative splicing …

[PDF][PDF] Robust and annotation-free analysis of isoform variation using short-read scRNA-seq data

G Benegas, J Fischer, YS Song - bioRxiv, 2021 - scholar.archive.org
Although isoform diversity is acknowledged as a fundamental and pervasive aspect of gene
expression in higher eukaryotes, it is often omitted from single-cell studies due to …

Cortexa-a comprehensive resource for studying gene expression and alternative splicing in the murine brain.

S Weissbach, J Milkovits, S Pastore, M Heine, S Gerber… - bioRxiv, 2024 - biorxiv.org
Motivation: Gene expression and alternative splicing are strictly regulated processes that
shape brain development and determine the cellular identity of differentiated neural cell …

Alternative splicing across the C. elegans nervous system

A Weinreb, E Varol, A Barrett, RM McWhirter, SR Taylor… - bioRxiv, 2024 - biorxiv.org
Alternative splicing is a key mechanism that shapes neuronal transcriptomes, helping to
define neuronal identity and modulate function. Here, we present an atlas of alternative …

A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification

D Wyman, G Balderrama-Gutierrez, F Reese, S Jiang… - Biorxiv, 2019 - biorxiv.org
Alternative splicing is widely acknowledged to be a crucial regulator of gene expression and
is a key contributor to both normal developmental processes and disease states. While cost …

Full-length transcript sequencing of human and mouse identifies widespread isoform diversity and alternative splicing in the cerebral cortex

AR Jeffries, SK Leung, I Castanho, K Moore, JP Davies… - bioRxiv, 2020 - biorxiv.org
Alternative splicing is a post-transcriptional regulatory mechanism producing multiple
distinct mRNA molecules from a single pre-mRNA. Alternative splicing has a prominent role …

Global regulatory features of alternative splicing across tissues and within the nervous system of C. elegans

B Koterniak, PP Pilaka, X Gracida… - Genome …, 2020 - genome.cshlp.org
Alternative splicing plays a major role in shaping tissue-specific transcriptomes. Among the
broad tissue types present in metazoans, the central nervous system contains some of the …

Robust and annotation-free analysis of alternative splicing across diverse cell types in mice

G Benegas, J Fischer, YS Song - Elife, 2022 - elifesciences.org
Although alternative splicing is a fundamental and pervasive aspect of gene expression in
higher eukaryotes, it is often omitted from single-cell studies due to quantification challenges …

Complexity and graded regulation of neuronal cell-type–specific alternative splicing revealed by single-cell RNA sequencing

H Feng, DF Moakley, S Chen… - Proceedings of the …, 2021 - National Acad Sciences
The enormous cellular diversity in the mammalian brain, which is highly prototypical and
organized in a hierarchical manner, is dictated by cell-type–specific gene-regulatory …

[HTML][HTML] Single-Cell Transcriptomics Reveals Splicing Features of Adult Neural Stem Cells in the Subventricular Zone

Y Wang, C Li, X Gong, X Chen, C Liu… - Frontiers in Cell and …, 2022 - frontiersin.org
The central nervous system has enormously complex cellular diversity with hundreds of
distinct cell types, yet alternative splicing features in single cells of important cell types at …