Deep Transcriptomics Reveals Cell-Specific Isoforms of Pan-Neuronal Genes
Profiling gene expression in single neurons using single-cell RNA-Seq is a powerful method
for understanding the molecular diversity of the nervous system. Profiling alternative splicing …
for understanding the molecular diversity of the nervous system. Profiling alternative splicing …
[PDF][PDF] Robust and annotation-free analysis of isoform variation using short-read scRNA-seq data
Although isoform diversity is acknowledged as a fundamental and pervasive aspect of gene
expression in higher eukaryotes, it is often omitted from single-cell studies due to …
expression in higher eukaryotes, it is often omitted from single-cell studies due to …
Cortexa-a comprehensive resource for studying gene expression and alternative splicing in the murine brain.
Motivation: Gene expression and alternative splicing are strictly regulated processes that
shape brain development and determine the cellular identity of differentiated neural cell …
shape brain development and determine the cellular identity of differentiated neural cell …
Alternative splicing across the C. elegans nervous system
A Weinreb, E Varol, A Barrett, RM McWhirter, SR Taylor… - bioRxiv, 2024 - biorxiv.org
Alternative splicing is a key mechanism that shapes neuronal transcriptomes, helping to
define neuronal identity and modulate function. Here, we present an atlas of alternative …
define neuronal identity and modulate function. Here, we present an atlas of alternative …
A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification
Alternative splicing is widely acknowledged to be a crucial regulator of gene expression and
is a key contributor to both normal developmental processes and disease states. While cost …
is a key contributor to both normal developmental processes and disease states. While cost …
Full-length transcript sequencing of human and mouse identifies widespread isoform diversity and alternative splicing in the cerebral cortex
AR Jeffries, SK Leung, I Castanho, K Moore, JP Davies… - bioRxiv, 2020 - biorxiv.org
Alternative splicing is a post-transcriptional regulatory mechanism producing multiple
distinct mRNA molecules from a single pre-mRNA. Alternative splicing has a prominent role …
distinct mRNA molecules from a single pre-mRNA. Alternative splicing has a prominent role …
Global regulatory features of alternative splicing across tissues and within the nervous system of C. elegans
B Koterniak, PP Pilaka, X Gracida… - Genome …, 2020 - genome.cshlp.org
Alternative splicing plays a major role in shaping tissue-specific transcriptomes. Among the
broad tissue types present in metazoans, the central nervous system contains some of the …
broad tissue types present in metazoans, the central nervous system contains some of the …
Robust and annotation-free analysis of alternative splicing across diverse cell types in mice
Although alternative splicing is a fundamental and pervasive aspect of gene expression in
higher eukaryotes, it is often omitted from single-cell studies due to quantification challenges …
higher eukaryotes, it is often omitted from single-cell studies due to quantification challenges …
Complexity and graded regulation of neuronal cell-type–specific alternative splicing revealed by single-cell RNA sequencing
The enormous cellular diversity in the mammalian brain, which is highly prototypical and
organized in a hierarchical manner, is dictated by cell-type–specific gene-regulatory …
organized in a hierarchical manner, is dictated by cell-type–specific gene-regulatory …
[HTML][HTML] Single-Cell Transcriptomics Reveals Splicing Features of Adult Neural Stem Cells in the Subventricular Zone
Y Wang, C Li, X Gong, X Chen, C Liu… - Frontiers in Cell and …, 2022 - frontiersin.org
The central nervous system has enormously complex cellular diversity with hundreds of
distinct cell types, yet alternative splicing features in single cells of important cell types at …
distinct cell types, yet alternative splicing features in single cells of important cell types at …