[HTML][HTML] Mining disease genes using integrated protein–protein interaction and gene–gene co-regulation information

J Li, L Wang, M Guo, R Zhang, Q Dai, X Liu, C Wang… - FEBS Open Bio, 2015 - Elsevier
In humans, despite the rapid increase in disease-associated gene discovery, a large
proportion of disease-associated genes are still unknown. Many network-based approaches …

Condition-specific gene co-expression network mining identifies key pathways and regulators in the brain tissue of Alzheimer's disease patients

S Xiang, Z Huang, T Wang, Z Han, CY Yu, D Ni… - BMC medical …, 2018 - Springer
Background Gene co-expression network (GCN) mining is a systematic approach to
efficiently identify novel disease pathways, predict novel gene functions and search for …

[PDF][PDF] Logistic regression algorithm to identify candidate disease genes based on reliable protein-protein interaction network

X Lei, W Zhang - Science China. Information Sciences, 2021 - scis.scichina.com
Genetic diseases have seriously threatened human health; however, identifying candidate
disease genes is expected to contribute to understanding complex genetic diseases …

Analysis for disease gene association using machine learning

M Sikandar, R Sohail, Y Saeed, A Zeb, M Zareei… - IEEE …, 2020 - ieeexplore.ieee.org
To recognize the basis of disease, it is essential to determine its underlying genes.
Understanding the association between underlying genes and genetic disease is a …

Exploring candidate genes for human brain diseases from a brain-specific gene network

B Liu, T Jiang, S Ma, H Zhao, J Li, X Jiang… - … and biophysical research …, 2006 - Elsevier
It is believed that large numbers of genes are involved in common human brain diseases.
Here, we propose a novel computational strategy for simultaneously identifying multiple …

Network-based prediction and knowledge mining of disease genes

MB Carson, H Lu - BMC medical genomics, 2015 - Springer
Background In recent years, high-throughput protein interaction identification methods have
generated a large amount of data. When combined with the results from other in vivo and in …

Machine learning-based identification of genetic interactions from heterogeneous gene expression profiles

C Park, JR Kim, J Kim, S Park - PloS one, 2018 - journals.plos.org
The identification of disease-related genes and disease mechanisms is an important
research goal; many studies have approached this problem by analysing genetic networks …

A new framework for discovering protein complex and disease association via mining multiple databases

L Xue, XQ Tang - Interdisciplinary Sciences: Computational Life …, 2021 - Springer
One important challenge in the post-genomic era is to explore disease mechanisms by
efficiently integrating different types of biological data. In fact, a single disease is usually …

DGHNE: network enhancement-based method in identifying disease-causing genes through a heterogeneous biomedical network

B He, K Wang, J Xiang, P Bing, M Tang… - Briefings in …, 2022 - academic.oup.com
The identification of disease-causing genes is critical for mechanistic understanding of
disease etiology and clinical manipulation in disease prevention and treatment. Yet the …

Network-based association analysis to infer new disease-gene relationships using large-scale protein interactions

A Suratanee, K Plaimas - PLoS One, 2018 - journals.plos.org
Protein-protein interactions integrated with disease-gene associations represent important
information for revealing protein functions under disease conditions to improve the …