Pangenome-wide and molecular evolution analyses of the Pseudomonas aeruginosa species

J Mosquera-Rendón, AM Rada-Bravo… - BMC genomics, 2016 - Springer
Background Drug treatments and vaccine designs against the opportunistic human
pathogen Pseudomonas aeruginosa have multiple issues, all associated with the diverse …

Draft genomes of 12 host-adapted and environmental isolates of Pseudomonas aeruginosa and their positions in the core genome phylogeny

L Stewart, A Ford, V Sangal, J Jeukens… - Pathogens and …, 2014 - academic.oup.com
Pseudomonas aeruginosa is a Gram-negative opportunistic pathogen particularly
associated with the inherited disease cystic fibrosis (CF). Pseudomonas aeruginosa is well …

Genomic and phenotypic comparison of environmental and patient-derived isolates of Pseudomonas aeruginosa suggest that antimicrobial resistance is rare within …

KA Ramsay, SJT Wardell… - Journal of Medical …, 2019 - microbiologyresearch.org
Patient-derived isolates of the opportunistic pathogen Pseudomonas aeruginosa are
frequently resistant to antibiotics due to the presence of sequence variants in resistance …

Complete genome sequence of Pseudomonas aeruginosa reference strain PAK

AK Cain, LM Nolan, GJ Sullivan… - Microbiology …, 2019 - Am Soc Microbiol
Complete Genome Sequence of Pseudomonas aeruginosa Reference Strain PAK |
Microbiology Resource Announcements CLOSE This Journal Anywhere Enter words / phrases …

There is no hiding if you Seq: recent breakthroughs in Pseudomonas aeruginosa research revealed by genomic and transcriptomic next-generation sequencing

RXE Valli, M Lyng… - Journal of medical …, 2020 - microbiologyresearch.org
The advent of next-generation sequencing technology has revolutionized the field of
prokaryotic genetics and genomics by allowing interrogation of entire genomes …

Genomic analyses of multidrug resistant Pseudomonas aeruginosa PA1 resequenced by single-molecule real-time sequencing

G Li, M Shen, S Le, Y Tan, M Li, X Zhao… - Bioscience …, 2016 - portlandpress.com
As a third-generation sequencing (TGS) method, single-molecule real-time (SMRT)
technology provides long read length, and it is well suited for resequencing projects and de …

Analysis of regulatory networks in Pseudomonas aeruginosa by genomewide transcriptional profiling

AL Goodman, S Lory - Current opinion in microbiology, 2004 - Elsevier
Transcriptional profiling using DNA microarrays has proved to be a valuable tool for
dissecting bacterial adaptation to various environments, including human hosts. Analysis of …

Genetic and Phenotypic Characterization of a Pseudomonas aeruginosa Population with High Frequency of Genomic Islands

R Morales-Espinosa, G Soberon-Chavez… - PloS one, 2012 - journals.plos.org
Various genomic islands, PAPI-1, PAPI-2, PAGI-1, PAGI-2, PAGI-3, and PAGI-4, and the
element pKLC102 have been characterized in different P. aeruginosa strains from diverse …

Dynamics of Pseudomonas aeruginosa genome evolution

K Mathee, G Narasimhan, C Valdes… - Proceedings of the …, 2008 - National Acad Sciences
One of the hallmarks of the Gram-negative bacterium Pseudomonas aeruginosa is its ability
to thrive in diverse environments that includes humans with a variety of debilitating diseases …

Cross-Sectional Analysis of Clinical and Environmental Isolates of Pseudomonas aeruginosa: Biofilm Formation, Virulence, and Genome Diversity

NE Head, H Yu - Infection and immunity, 2004 - Am Soc Microbiol
Chronic lung infections with Pseudomonas aeruginosa biofilms are associated with
refractory and fatal pneumonia in cystic fibrosis (CF). In this study, a group of genomically …