An aptly positioned azido group in the spacer of a protein cross‐linker for facile mapping of lysines in close proximity
PT Kasper, JW Back, M Vitale, AF Hartog… - …, 2007 - Wiley Online Library
Cross‐links between amino acid residues in close proximity can provide distance
constraints for the validation of models of the 3D structure proteins. The mapping of cross …
constraints for the validation of models of the 3D structure proteins. The mapping of cross …
Capturing Protein–Protein Interactions with Acidic Amino Acids Reactive Cross‐Linkers
QQ Liao, X Shu, W Sun, H Mandapaka, F Xie, Z Zhang… - Small, 2023 - Wiley Online Library
Abstract Acidic residues (Asp and Glu) have a high prevalence on protein surfaces, but
cross‐linking reactions targeting these residues are limited. Existing methods either require …
cross‐linking reactions targeting these residues are limited. Existing methods either require …
A bifunctional noncanonical amino acid: synthesis, expression, and residue-specific proteome-wide incorporation
Mapping of weak and hence transient interactions between low-abundance interacting
molecules is still a major challenge in systems biology and protein biochemistry. Therefore …
molecules is still a major challenge in systems biology and protein biochemistry. Therefore …
Isotope-coded and affinity-tagged cross-linking (ICATXL): an efficient strategy to probe protein interaction surfaces
Chemical cross-linking followed by identification of the cross-linked residues by mass
spectrometry provides structural information on protein interaction surfaces. Nevertheless …
spectrometry provides structural information on protein interaction surfaces. Nevertheless …
Understanding chemical reactivity for homo‐and heterobifunctional protein cross‐linking agents
F Chen, S Nielsen, R Zenobi - Journal of Mass Spectrometry, 2013 - Wiley Online Library
Chemical cross‐linking, combined with mass spectrometry, has been applied to map three‐
dimensional protein structures and protein–protein interactions. Proper choice of the cross …
dimensional protein structures and protein–protein interactions. Proper choice of the cross …
Site‐specific Protein Cross‐Linking with Genetically Incorporated 3,4‐Dihydroxy‐L‐Phenylalanine
A Umeda, GN Thibodeaux, J Zhu, YA Lee… - …, 2009 - Wiley Online Library
Come together right now with l‐DOPA: Chemical cross‐linking is widely used to study
protein–protein interactions. However, many cross‐linking agents suffer from low reactivity …
protein–protein interactions. However, many cross‐linking agents suffer from low reactivity …
[HTML][HTML] Finding chimeras: a bioinformatics strategy for identification of cross-linked peptides
F Chu, PR Baker, AL Burlingame… - Molecular & Cellular …, 2010 - ASBMB
Chemical cross-linking, followed by identification of the cross-linked residues, is a powerful
approach to probe the topologies and interacting surfaces of protein assemblies. In this …
approach to probe the topologies and interacting surfaces of protein assemblies. In this …
[HTML][HTML] Isotopically coded cleavable cross-linker for studying protein-protein interaction and protein complexes
EV Petrotchenko, VK Olkhovik, CH Borchers - Molecular & Cellular …, 2005 - ASBMB
An emerging approach for studying protein-protein interaction in complexes is the
combination of chemical cross-linking and mass spectrometric analysis of the cross-linked …
combination of chemical cross-linking and mass spectrometric analysis of the cross-linked …
A novel bio-orthogonal cross-linker for improved protein/protein interaction analysis
C Nury, V Redeker, S Dautrey, A Romieu… - Analytical …, 2015 - ACS Publications
The variety of protein cross-linkers developed in recent years illustrates the current
requirement for efficient reagents optimized for mass spectrometry (MS) analysis. To date …
requirement for efficient reagents optimized for mass spectrometry (MS) analysis. To date …
Lysine-specific chemical cross-linking of protein complexes and identification of cross-linking sites using LC-MS/MS and the xQuest/xProphet software pipeline
A Leitner, T Walzthoeni, R Aebersold - Nature protocols, 2014 - nature.com
Chemical cross-linking in combination with LC-MS/MS (XL-MS) is an emerging technology
to obtain low-resolution structural (distance) restraints of proteins and protein complexes …
to obtain low-resolution structural (distance) restraints of proteins and protein complexes …