Prediction of MHC class I binding peptides using profile motifs

PA Reche, JP Glutting, EL Reinherz - Human immunology, 2002 - Elsevier
Peptides that bind to a given major histocompatibility complex (MHC) molecule share
sequence similarity. Therefore, a position specific scoring matrix (PSSM) or profile derived …

Prediction of peptide-MHC binding using profiles

PA Reche, EL Reinherz - Immunoinformatics: predicting immunogenicity in …, 2007 - Springer
Prediction of peptide binding to major histocompatibility complex (MHC) molecules is a
basis for anticipating T-cell epitopes. Peptides that bind to a given MHC molecule are …

A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach

P Wang, J Sidney, C Dow, B Mothé… - PLoS computational …, 2008 - journals.plos.org
The identification of MHC class II restricted peptide epitopes is an important goal in
immunological research. A number of computational tools have been developed for this …

Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles

O Schueler-Furman, Y Altuvia, A Sette, H Margalit - Protein Science, 2000 - cambridge.org
Specific binding of antigenic peptides to major histocompatibility complex (MHC) class I
molecules is a prerequisite for their recognition by cytotoxic T-cells. Prediction of MHC …

Methods for prediction of peptide binding to MHC molecules: a comparative study

K Yu, N Petrovsky, C Schönbach, JLY Koh, V Brusic - Molecular medicine, 2002 - Springer
Background A variety of methods for prediction of peptide binding to major histocompatibility
complex (MHC) have been proposed. These methods are based on binding motifs, binding …

NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ

E Karosiene, M Rasmussen, T Blicher, O Lund, S Buus… - Immunogenetics, 2013 - Springer
Major histocompatibility complex class II (MHCII) molecules play an important role in cell-
mediated immunity. They present specific peptides derived from endosomal proteins for …

Peptide binding specificity of major histocompatibility complex class I resolved into an array of apparently independent subspecificities: quantitation by peptide …

A Stryhn, LØ Pedersen, T Romme… - European journal of …, 1996 - Wiley Online Library
Considerable interest has focused on understanding how major histocompatibility complex
(MHC) specificity is generated and characterizing the specificity of MHC molecules with the …

Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods

H Zhang, C Lundegaard, M Nielsen - Bioinformatics, 2009 - academic.oup.com
Motivation: MHC: peptide binding plays a central role in activating the immune surveillance.
Computational approaches to determine T-cell epitopes restricted to any given major …

Improved methods for predicting peptide binding affinity to MHC class II molecules

KK Jensen, M Andreatta, P Marcatili, S Buus… - …, 2018 - Wiley Online Library
Major histocompatibility complex class II (MHC‐II) molecules are expressed on the surface
of professional antigen‐presenting cells where they display peptides to T helper cells, which …

SVRMHC prediction server for MHC-binding peptides

J Wan, W Liu, Q Xu, Y Ren, DR Flower, T Li - BMC bioinformatics, 2006 - Springer
Background The binding between antigenic peptides (epitopes) and the MHC molecule is a
key step in the cellular immune response. Accurate in silico prediction of epitope-MHC …