Prediction of MHC class I binding peptides using profile motifs
PA Reche, JP Glutting, EL Reinherz - Human immunology, 2002 - Elsevier
Peptides that bind to a given major histocompatibility complex (MHC) molecule share
sequence similarity. Therefore, a position specific scoring matrix (PSSM) or profile derived …
sequence similarity. Therefore, a position specific scoring matrix (PSSM) or profile derived …
Prediction of peptide-MHC binding using profiles
PA Reche, EL Reinherz - Immunoinformatics: predicting immunogenicity in …, 2007 - Springer
Prediction of peptide binding to major histocompatibility complex (MHC) molecules is a
basis for anticipating T-cell epitopes. Peptides that bind to a given MHC molecule are …
basis for anticipating T-cell epitopes. Peptides that bind to a given MHC molecule are …
A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach
The identification of MHC class II restricted peptide epitopes is an important goal in
immunological research. A number of computational tools have been developed for this …
immunological research. A number of computational tools have been developed for this …
Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles
Specific binding of antigenic peptides to major histocompatibility complex (MHC) class I
molecules is a prerequisite for their recognition by cytotoxic T-cells. Prediction of MHC …
molecules is a prerequisite for their recognition by cytotoxic T-cells. Prediction of MHC …
Methods for prediction of peptide binding to MHC molecules: a comparative study
Background A variety of methods for prediction of peptide binding to major histocompatibility
complex (MHC) have been proposed. These methods are based on binding motifs, binding …
complex (MHC) have been proposed. These methods are based on binding motifs, binding …
NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ
Major histocompatibility complex class II (MHCII) molecules play an important role in cell-
mediated immunity. They present specific peptides derived from endosomal proteins for …
mediated immunity. They present specific peptides derived from endosomal proteins for …
Peptide binding specificity of major histocompatibility complex class I resolved into an array of apparently independent subspecificities: quantitation by peptide …
A Stryhn, LØ Pedersen, T Romme… - European journal of …, 1996 - Wiley Online Library
Considerable interest has focused on understanding how major histocompatibility complex
(MHC) specificity is generated and characterizing the specificity of MHC molecules with the …
(MHC) specificity is generated and characterizing the specificity of MHC molecules with the …
Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods
H Zhang, C Lundegaard, M Nielsen - Bioinformatics, 2009 - academic.oup.com
Motivation: MHC: peptide binding plays a central role in activating the immune surveillance.
Computational approaches to determine T-cell epitopes restricted to any given major …
Computational approaches to determine T-cell epitopes restricted to any given major …
Improved methods for predicting peptide binding affinity to MHC class II molecules
Major histocompatibility complex class II (MHC‐II) molecules are expressed on the surface
of professional antigen‐presenting cells where they display peptides to T helper cells, which …
of professional antigen‐presenting cells where they display peptides to T helper cells, which …
SVRMHC prediction server for MHC-binding peptides
J Wan, W Liu, Q Xu, Y Ren, DR Flower, T Li - BMC bioinformatics, 2006 - Springer
Background The binding between antigenic peptides (epitopes) and the MHC molecule is a
key step in the cellular immune response. Accurate in silico prediction of epitope-MHC …
key step in the cellular immune response. Accurate in silico prediction of epitope-MHC …
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