PubChem3D: a new resource for scientists

EE Bolton, J Chen, S Kim, L Han, S He, W Shi… - Journal of …, 2011 - Springer
Background PubChem is an open repository for small molecules and their experimental
biological activity. PubChem integrates and provides search, retrieval, visualization …

PubChem3D: conformer generation

EE Bolton, S Kim, SH Bryant - Journal of cheminformatics, 2011 - Springer
Background PubChem, an open archive for the biological activities of small molecules,
provides search and analysis tools to assist users in locating desired information. Many of …

Exploring chemical information in PubChem

S Kim - Current protocols, 2021 - Wiley Online Library
Abstract PubChem (https://pubchem. ncbi. nlm. nih. gov) is a public chemical database that
serves scientific communities as well as the general public. This database collects chemical …

PubChem chemical structure standardization

VD Hähnke, S Kim, EE Bolton - Journal of cheminformatics, 2018 - Springer
Background PubChem is a chemical information repository, consisting of three primary
databases: Substance, Compound, and BioAssay. When individual data contributors submit …

[HTML][HTML] PubChem protein, gene, pathway, and taxonomy data collections: bridging biology and chemistry through target-centric views of PubChem data

S Kim, T Cheng, S He, PA Thiessen, Q Li… - Journal of molecular …, 2022 - Elsevier
Abstract PubChem (https://pubchem. ncbi. nlm. nih. gov) is a public chemical database at the
US National Institutes of Health. Visited by millions of users every month, it plays a role as a …

Quantitative assessment of the expanding complementarity between public and commercial databases of bioactive compounds

C Southan, P Várkonyi, S Muresan - Journal of cheminformatics, 2009 - Springer
Background Since 2004 public cheminformatic databases and their collective functionality
for exploring relationships between compounds, protein sequences, literature and assay …

A searchable map of PubChem

R Deursen, LC Blum, JL Reymond - Journal of chemical …, 2010 - ACS Publications
The database PubChem was classified using 42 integer value descriptors of molecular
structure, here called molecular quantum numbers (MQNs), which count atoms and bond …

Browsable structure-activity datasets

MA Johnson - Advances in Molecular Similarity, 1998 - books.google.com
Ever-larger structure—activity datasets are motivating the need for ways of rapidly finding
and validating interesting structure—activity patterns. Patterns among chemical and …

One-dimensional molecular representations and similarity calculations: methodology and validation

SL Dixon, KM Merz - Journal of Medicinal Chemistry, 2001 - ACS Publications
Drug discovery research is increasingly dedicated to biological screening on a massive
scale, which seems to imply a basic rejection of many computer-assisted techniques …

Bona Fide Predictions of Protein Secondary Structure Using Transparent Analyses of Multiple Sequence Alignments

SA Benner, G Cannarozzi, D Gerloff, M Turcotte… - Chemical …, 1997 - ACS Publications
By any measure, the 1990s is the decade of the genome. Sequences of the chromosomes of
two eubacteria (Haemophilus influenzae and Mycoplasma genitalium), 1, 2 one …