[HTML][HTML] Extraction of network topology from multi-electrode recordings: is there a small-world effect?

F Gerhard, G Pipa, B Lima… - Frontiers in …, 2011 - frontiersin.org
The simultaneous recording of the activity of many neurons poses challenges for
multivariate data analysis. Here, we propose a general scheme of reconstruction of the …

[HTML][HTML] Identification of excitatory-inhibitory links and network topology in large-scale neuronal assemblies from multi-electrode recordings

VP Pastore, P Massobrio, A Godjoski… - PLoS computational …, 2018 - journals.plos.org
Functional-effective connectivity and network topology are nowadays key issues for studying
brain physiological functions and pathologies. Inferring neuronal connectivity from …

[HTML][HTML] Efficient" shotgun" inference of neural connectivity from highly sub-sampled activity data

D Soudry, S Keshri, P Stinson, M Oh… - PLoS computational …, 2015 - journals.plos.org
Inferring connectivity in neuronal networks remains a key challenge in statistical
neuroscience. The “common input” problem presents a major roadblock: it is difficult to …

[HTML][HTML] Connectivity inference from neural recording data: Challenges, mathematical bases and research directions

IM de Abril, J Yoshimoto, K Doya - Neural Networks, 2018 - Elsevier
This article presents a review of computational methods for connectivity inference from
neural activity data derived from multi-electrode recordings or fluorescence imaging. We first …

Functional structure of cortical neuronal networks grown in vitro

LMA Bettencourt, GJ Stephens, MI Ham… - Physical Review E …, 2007 - APS
We apply an information-theoretic treatment of action potential time series measured with
microelectrode arrays to estimate the connectivity of mammalian neuronal cell assemblies …

Identifying functional connectivity in large-scale neural ensemble recordings: a multiscale data mining approach

S Eldawlatly, R Jin, KG Oweiss - Neural computation, 2009 - direct.mit.edu
Identifying functional connectivity between neuronal elements is an essential first step
toward understanding how the brain orchestrates information processing at the single-cell …

[HTML][HTML] From correlation to causation: Estimating effective connectivity from zero-lag covariances of brain signals

J Schiefer, A Niederbühl, V Pernice… - PLoS computational …, 2018 - journals.plos.org
Knowing brain connectivity is of great importance both in basic research and for clinical
applications. We are proposing a method to infer directed connectivity from zero-lag …

Persistent patterns of interconnection in time-varying cortical networks estimated from high-resolution EEG recordings in humans during a simple motor act

FDV Fallani, V Latora, L Astolfi, F Cincotti… - Journal of Physics A …, 2008 - iopscience.iop.org
In this work, a novel approach based on the estimate of time-varying graph indices is
proposed in order to capture the basic schemes of communication within the functional brain …

[HTML][HTML] Successful reconstruction of a physiological circuit with known connectivity from spiking activity alone

F Gerhard, T Kispersky, GJ Gutierrez… - PLoS computational …, 2013 - journals.plos.org
Identifying the structure and dynamics of synaptic interactions between neurons is the first
step to understanding neural network dynamics. The presence of synaptic connections is …

[HTML][HTML] ToolConnect: A Functional Connectivity Toolbox for In vitro Networks

VP Pastore, D Poli, A Godjoski, S Martinoia… - Frontiers in …, 2016 - frontiersin.org
Nowadays, the use of in vitro reduced models of neuronal networks to investigate the
interplay between structural-functional connectivity and the emerging collective dynamics is …