Accurate prediction of genetic values for complex traits by whole-genome resequencing
T Meuwissen, M Goddard - Genetics, 2010 - academic.oup.com
Whole-genome resequencing technology has improved rapidly during recent years and is
expected to improve further such that the sequencing of an entire human genome sequence …
expected to improve further such that the sequencing of an entire human genome sequence …
The effects of demography and long-term selection on the accuracy of genomic prediction with sequence data
The use of dense SNPs to predict the genetic value of an individual for a complex trait is
often referred to as “genomic selection” in livestock and crops, but is also relevant to human …
often referred to as “genomic selection” in livestock and crops, but is also relevant to human …
A fast algorithm for BayesB type of prediction of genome-wide estimates of genetic value
THE Meuwissen, TR Solberg, R Shepherd… - Genetics Selection …, 2009 - Springer
Genomic selection uses genome-wide dense SNP marker genotyping for the prediction of
genetic values, and consists of two steps:(1) estimation of SNP effects, and (2) prediction of …
genetic values, and consists of two steps:(1) estimation of SNP effects, and (2) prediction of …
Toward genomic prediction from whole-genome sequence data: impact of sequencing design on genotype imputation and accuracy of predictions
Genomic prediction from whole-genome sequence data is attractive, as the accuracy of
genomic prediction is no longer bounded by extent of linkage disequilibrium between DNA …
genomic prediction is no longer bounded by extent of linkage disequilibrium between DNA …
Genomic prediction of breeding values using a subset of SNPs identified by three machine learning methods
The analysis of large genomic data is hampered by issues such as a small number of
observations and a large number of predictive variables (commonly known as “large P small …
observations and a large number of predictive variables (commonly known as “large P small …
Characterizing bias in population genetic inferences from low-coverage sequencing data
E Han, JS Sinsheimer… - Molecular biology and …, 2014 - academic.oup.com
The site frequency spectrum (SFS) is of primary interest in population genetic studies,
because the SFS compresses variation data into a simple summary from which many …
because the SFS compresses variation data into a simple summary from which many …
Sequence-vs. chip-assisted genomic selection: accurate biological information is advised
Background The development of next-generation sequencing technologies (NGS) has made
the use of whole-genome sequence data for routine genetic evaluations possible, which has …
the use of whole-genome sequence data for routine genetic evaluations possible, which has …
Reliability of genomic predictions across multiple populations
APW De Roos, BJ Hayes, ME Goddard - Genetics, 2009 - academic.oup.com
Genomic prediction of future phenotypes or genetic merit using dense SNP genotypes can
be used for prediction of disease risk, forensics, and genomic selection of livestock and …
be used for prediction of disease risk, forensics, and genomic selection of livestock and …
Assessing the effect of sequencing depth and sample size in population genetics inferences
M Fumagalli - PloS one, 2013 - journals.plos.org
Next-Generation Sequencing (NGS) technologies have dramatically revolutionised research
in many fields of genetics. The ability to sequence many individuals from one or multiple …
in many fields of genetics. The ability to sequence many individuals from one or multiple …
Different models of genetic variation and their effect on genomic evaluation
Background The theory of genomic selection is based on the prediction of the effects of
quantitative trait loci (QTL) in linkage disequilibrium (LD) with markers. However, there is …
quantitative trait loci (QTL) in linkage disequilibrium (LD) with markers. However, there is …