The BigBrainWarp toolbox for integration of BigBrain 3D histology with multimodal neuroimaging
Neuroimaging stands to benefit from emerging ultrahigh-resolution 3D histological atlases of
the human brain; the first of which is 'BigBrain'. Here, we review recent methodological …
the human brain; the first of which is 'BigBrain'. Here, we review recent methodological …
A unified 3D map of microscopic architecture and MRI of the human brain
We present the first three-dimensional (3D) concordance maps of cyto-and fiber architecture
of the human brain, combining histology, immunohistochemistry, and 7-T quantitative …
of the human brain, combining histology, immunohistochemistry, and 7-T quantitative …
A multimodal computational pipeline for 3D histology of the human brain
Ex vivo imaging enables analysis of the human brain at a level of detail that is not possible
in vivo with MRI. In particular, histology can be used to study brain tissue at the microscopic …
in vivo with MRI. In particular, histology can be used to study brain tissue at the microscopic …
BigBrain: an ultrahigh-resolution 3D human brain model
Reference brains are indispensable tools in human brain mapping, enabling integration of
multimodal data into an anatomically realistic standard space. Available reference brains …
multimodal data into an anatomically realistic standard space. Available reference brains …
Creation of computerized 3D MRI-integrated atlases of the human basal ganglia and thalamus
AF Sadikot, MM Chakravarty, G Bertrand… - Frontiers in systems …, 2011 - frontiersin.org
Functional brain imaging and neurosurgery in subcortical areas often requires visualization
of brain nuclei beyond the resolution of current magnetic resonance imaging (MRI) methods …
of brain nuclei beyond the resolution of current magnetic resonance imaging (MRI) methods …
[HTML][HTML] The SIGMA rat brain templates and atlases for multimodal MRI data analysis and visualization
Preclinical imaging studies offer a unique access to the rat brain, allowing investigations that
go beyond what is possible in human studies. Unfortunately, these techniques still suffer …
go beyond what is possible in human studies. Unfortunately, these techniques still suffer …
[HTML][HTML] Virtual brain grafting: Enabling whole brain parcellation in the presence of large lesions
Brain atlases and templates are at the heart of neuroimaging analyses, for which they
facilitate multimodal registration, enable group comparisons and provide anatomical …
facilitate multimodal registration, enable group comparisons and provide anatomical …
High-throughput 3D whole-brain quantitative histopathology in rodents
ME Vandenberghe, AS Hérard, N Souedet… - Scientific reports, 2016 - nature.com
Histology is the gold standard to unveil microscopic brain structures and pathological
alterations in humans and animal models of disease. However, due to tedious manual …
alterations in humans and animal models of disease. However, due to tedious manual …
An accurate registration of the BigBrain dataset with the MNI PD25 and ICBM152 atlases
Brain atlases that encompass detailed anatomical or physiological features are instrumental
in the research and surgical planning of various neurological conditions. Magnetic …
in the research and surgical planning of various neurological conditions. Magnetic …
Interoperable atlases of the human brain
The last two decades have seen an unprecedented development of human brain mapping
approaches at various spatial and temporal scales. Together, these have provided a large …
approaches at various spatial and temporal scales. Together, these have provided a large …