The BigBrainWarp toolbox for integration of BigBrain 3D histology with multimodal neuroimaging

C Paquola, J Royer, LB Lewis, C Lepage, T Glatard… - Elife, 2021 - elifesciences.org
Neuroimaging stands to benefit from emerging ultrahigh-resolution 3D histological atlases of
the human brain; the first of which is 'BigBrain'. Here, we review recent methodological …

A unified 3D map of microscopic architecture and MRI of the human brain

A Alkemade, PL Bazin, R Balesar, K Pine, E Kirilina… - Science …, 2022 - science.org
We present the first three-dimensional (3D) concordance maps of cyto-and fiber architecture
of the human brain, combining histology, immunohistochemistry, and 7-T quantitative …

A multimodal computational pipeline for 3D histology of the human brain

M Mancini, A Casamitjana, L Peter, E Robinson… - Scientific reports, 2020 - nature.com
Ex vivo imaging enables analysis of the human brain at a level of detail that is not possible
in vivo with MRI. In particular, histology can be used to study brain tissue at the microscopic …

BigBrain: an ultrahigh-resolution 3D human brain model

K Amunts, C Lepage, L Borgeat, H Mohlberg… - science, 2013 - science.org
Reference brains are indispensable tools in human brain mapping, enabling integration of
multimodal data into an anatomically realistic standard space. Available reference brains …

Creation of computerized 3D MRI-integrated atlases of the human basal ganglia and thalamus

AF Sadikot, MM Chakravarty, G Bertrand… - Frontiers in systems …, 2011 - frontiersin.org
Functional brain imaging and neurosurgery in subcortical areas often requires visualization
of brain nuclei beyond the resolution of current magnetic resonance imaging (MRI) methods …

[HTML][HTML] The SIGMA rat brain templates and atlases for multimodal MRI data analysis and visualization

DA Barrière, R Magalhães, A Novais, P Marques… - Nature …, 2019 - nature.com
Preclinical imaging studies offer a unique access to the rat brain, allowing investigations that
go beyond what is possible in human studies. Unfortunately, these techniques still suffer …

[HTML][HTML] Virtual brain grafting: Enabling whole brain parcellation in the presence of large lesions

AM Radwan, L Emsell, J Blommaert, A Zhylka… - NeuroImage, 2021 - Elsevier
Brain atlases and templates are at the heart of neuroimaging analyses, for which they
facilitate multimodal registration, enable group comparisons and provide anatomical …

High-throughput 3D whole-brain quantitative histopathology in rodents

ME Vandenberghe, AS Hérard, N Souedet… - Scientific reports, 2016 - nature.com
Histology is the gold standard to unveil microscopic brain structures and pathological
alterations in humans and animal models of disease. However, due to tedious manual …

An accurate registration of the BigBrain dataset with the MNI PD25 and ICBM152 atlases

Y Xiao, JC Lau, T Anderson, J DeKraker, DL Collins… - Scientific Data, 2019 - nature.com
Brain atlases that encompass detailed anatomical or physiological features are instrumental
in the research and surgical planning of various neurological conditions. Magnetic …

Interoperable atlases of the human brain

K Amunts, MJ Hawrylycz, DC Van Essen, JD Van Horn… - Neuroimage, 2014 - Elsevier
The last two decades have seen an unprecedented development of human brain mapping
approaches at various spatial and temporal scales. Together, these have provided a large …