Population epigenetics: DNA methylation in the plant omics era
J Liu, X Zhong - Plant Physiology, 2024 - academic.oup.com
DNA methylation plays an important role in many biological processes. The mechanisms
underlying the establishment and maintenance of DNA methylation are well understood …
underlying the establishment and maintenance of DNA methylation are well understood …
DNA methylation analysis in plants: review of computational tools and future perspectives
J Omony, T Nussbaumer, R Gutzat - Briefings in bioinformatics, 2020 - academic.oup.com
Genome-wide DNA methylation studies have quickly expanded due to advances in next-
generation sequencing techniques along with a wealth of computational tools to analyze the …
generation sequencing techniques along with a wealth of computational tools to analyze the …
Evaluation of MeDIP-Chip in the Context of Whole-Genome Bisulfite Sequencing (WGBS-Seq) in Arabidopsis
Studies of DNA methylation in Arabidopsis have rapidly advanced from the analysis of a
single reference accession to investigations of large populations. The goal of emerging …
single reference accession to investigations of large populations. The goal of emerging …
Unlocking the Arabidopsis epigenome
J Reinders, J Paszkowski - Epigenetics, 2009 - Taylor & Francis
The patterns of DNA methylation, referred to as the “methylome”, must be faithfully
propagated for proper development of plants and mammals. However, it has been unclear to …
propagated for proper development of plants and mammals. However, it has been unclear to …
MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite …
Whole-genome bisulfite sequencing (WGBS) is the standard method for profiling DNA
methylation at single-nucleotide resolution. Different tools have been developed to extract …
methylation at single-nucleotide resolution. Different tools have been developed to extract …
The causes and consequences of DNA methylome variation in plants
DK Seymour, C Becker - Current opinion in plant biology, 2017 - Elsevier
Highlights•Epigenetic variation in plants is frequently linked to genetic variation.•Single large
effect mutations perturb the epigenetic landscape in trans.•DNA methylation regulates …
effect mutations perturb the epigenetic landscape in trans.•DNA methylation regulates …
Covering your bases: inheritance of DNA methylation in plant genomes
CE Niederhuth, RJ Schmitz - Molecular plant, 2014 - cell.com
Cytosine methylation is an important base modification that is inherited across mitotic and
meiotic cell divisions in plant genomes. Heritable methylation variants can contribute to …
meiotic cell divisions in plant genomes. Heritable methylation variants can contribute to …
Exploring the crop epigenome: a comparison of DNA methylation profiling techniques
Epigenetic modifications play a vital role in the preservation of genome integrity and in the
regulation of gene expression. DNA methylation, one of the key mechanisms of epigenetic …
regulation of gene expression. DNA methylation, one of the key mechanisms of epigenetic …
MethylC-analyzer: a comprehensive downstream pipeline for the analysis of genome-wide DNA methylation
DNA methylation is a crucial epigenetic modification involved in multiple biological
processes and diseases. Current approaches for measuring genome-wide DNA methylation …
processes and diseases. Current approaches for measuring genome-wide DNA methylation …
Accessing epigenetic variation in the plant methylome
KD Kim, M El Baidouri… - Briefings in Functional …, 2014 - academic.oup.com
Cytosine DNA methylation is the addition of a methyl group to the 5′ position of a cytosine,
which plays a crucial role in plant development and gene silencing. Genome-wide profiling …
which plays a crucial role in plant development and gene silencing. Genome-wide profiling …