A low-coverage 3′ RNA-seq to detect homeolog expression in polyploid wheat

J Sun, M Okada, T Tameshige… - NAR Genomics and …, 2023 - academic.oup.com
Although allopolyploid species are common among natural and crop species, it is not easy
to distinguish duplicated genes, known as homeologs, during their genomic analysis. Yet …

Gene loss, silencing and activation in a newly synthesized wheat allotetraploid

K Kashkush, M Feldman, AA Levy - Genetics, 2002 - academic.oup.com
We analyzed the events that affect gene structure and expression in the early stages of
allopolyploidy in wheat. The transcriptome response was studied by analyzing 3072 …

[HTML][HTML] Transcriptome analysis of grain development in hexaploid wheat

Y Wan, RL Poole, AK Huttly, C Toscano-Underwood… - BMC genomics, 2008 - Springer
Background Hexaploid wheat is one of the most important cereal crops for human nutrition.
Molecular understanding of the biology of the developing grain will assist the improvement …

[HTML][HTML] Genomic variants affecting homoeologous gene expression dosage contribute to agronomic trait variation in allopolyploid wheat

F He, W Wang, WB Rutter, KW Jordan, J Ren… - Nature …, 2022 - nature.com
Allopolyploidy greatly expands the range of possible regulatory interactions among
functionally redundant homoeologous genes. However, connection between the emerging …

[HTML][HTML] Genome-Wide Transcription During Early Wheat Meiosis Is Independent of Synapsis, Ploidy Level, and the Ph1 Locus

AC Martín, P Borrill, J Higgins, A Alabdullah… - Frontiers in plant …, 2018 - frontiersin.org
Polyploidization is a fundamental process in plant evolution. One of the biggest challenges
faced by a new polyploid is meiosis, particularly discriminating between multiple related …

[HTML][HTML] Transcriptome analysis reveals important candidate genes related to nutrient reservoir, carbohydrate metabolism, and defence proteins during grain …

M Kaushik, S Rai, S Venkadesan, SK Sinha, S Mohan… - Genes, 2020 - mdpi.com
Wheat grain development after anthesis is an important biological process, in which major
components of seeds are synthesised, and these components are further required for …

Genomics as the key to unlocking the polyploid potential of wheat

P Borrill, N Adamski, C Uauy - New Phytologist, 2015 - Wiley Online Library
Polyploidy has played a central role in plant genome evolution and in the formation of new
species such as tetraploid pasta wheat and hexaploid bread wheat. Until recently, the high …

Genetic and epigenetic reprogramming of the wheat genome upon allopolyploidization

AA Levy, M Feldman - Biological journal of the Linnean society, 2004 - academic.oup.com
In the past few years we have analysed alterations in genome structure and expression that
occur in wheat upon allopolyploidization. Our major findings in natural and synthetic …

New insights into homoeologous copy number variations in the hexaploid wheat genome

C Juery, L Concia, R De Oliveira, N Papon… - The Plant …, 2021 - Wiley Online Library
Bread wheat is an allohexaploid species originating from two successive and recent rounds
of hybridization between three diploid species that were very similar in terms of chromosome …

[HTML][HTML] Dispersed emergence and protracted domestication of polyploid wheat uncovered by mosaic ancestral haploblock inference

Z Wang, W Wang, X Xie, Y Wang, Z Yang… - Nature …, 2022 - nature.com
Major crops are all survivors of domestication bottlenecks. Studies have focused on the
genetic loci related to the domestication syndrome, while the contribution of ancient …