The effects of cytosine methylation on general transcription factors
DNA methylation on CpG sites is the most common epigenetic modification. Recently,
methylation in a non-CpG context was found to occur widely on genomic DNA. Moreover …
methylation in a non-CpG context was found to occur widely on genomic DNA. Moreover …
Effects of cytosine methylation on transcription factor binding sites
Background DNA methylation in promoters is closely linked to downstream gene repression.
However, whether DNA methylation is a cause or a consequence of gene repression …
However, whether DNA methylation is a cause or a consequence of gene repression …
MeDReaders: a database for transcription factors that bind to methylated DNA
Understanding the molecular principles governing interactions between transcription factors
(TFs) and DNA targets is one of the main subjects for transcriptional regulation. Recently …
(TFs) and DNA targets is one of the main subjects for transcriptional regulation. Recently …
[HTML][HTML] Toward a mechanistic understanding of DNA methylation readout by transcription factors
Epigenetic DNA modification impacts gene expression, but the underlying molecular
mechanisms are only partly understood. Adding a methyl group to a cytosine base locally …
mechanisms are only partly understood. Adding a methyl group to a cytosine base locally …
Evolving insights on how cytosine methylation affects protein–DNA binding
Many anecdotal observations exist of a regulatory effect of DNA methylation on gene
expression. However, in general, the underlying mechanisms of this effect are poorly …
expression. However, in general, the underlying mechanisms of this effect are poorly …
DNA methylation presents distinct binding sites for human transcription factors
DNA methylation, especially CpG methylation at promoter regions, has been generally
considered as a potent epigenetic modification that prohibits transcription factor (TF) …
considered as a potent epigenetic modification that prohibits transcription factor (TF) …
Impact of cytosine methylation on DNA binding specificities of human transcription factors
INTRODUCTION Nearly all cells in the human body share the same primary genome
sequence consisting of four nucleotide bases. One of the bases, cytosine, is commonly …
sequence consisting of four nucleotide bases. One of the bases, cytosine, is commonly …
Sensitivity of transcription factors to DNA methylation
Dynamic binding of transcription factors (TFs) to regulatory elements controls transcriptional
states throughout organism development. Epigenetics modifications, such as DNA …
states throughout organism development. Epigenetics modifications, such as DNA …
Effects of DNA methylation on TFs in human embryonic stem cells
X Luo, T Zhang, Y Zhai, F Wang, S Zhang… - Frontiers in genetics, 2021 - frontiersin.org
DNA methylation is an important epigenetic mechanism for gene regulation. The
conventional view of DNA methylation is that DNA methylation could disrupt protein-DNA …
conventional view of DNA methylation is that DNA methylation could disrupt protein-DNA …
Toward a base-resolution panorama of the in vivo impact of cytosine methylation on transcription factor binding
A Hernandez-Corchado, HS Najafabadi - Genome Biology, 2022 - Springer
Abstract Background While methylation of CpG dinucleotides is traditionally considered
antagonistic to the DNA-binding activity of most transcription factors (TFs), recent in vitro …
antagonistic to the DNA-binding activity of most transcription factors (TFs), recent in vitro …
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