The effects of cytosine methylation on general transcription factors

J Jin, T Lian, C Gu, K Yu, YQ Gao, XD Su - Scientific reports, 2016 - nature.com
DNA methylation on CpG sites is the most common epigenetic modification. Recently,
methylation in a non-CpG context was found to occur widely on genomic DNA. Moreover …

Effects of cytosine methylation on transcription factor binding sites

YA Medvedeva, AM Khamis, IV Kulakovskiy… - BMC genomics, 2014 - Springer
Background DNA methylation in promoters is closely linked to downstream gene repression.
However, whether DNA methylation is a cause or a consequence of gene repression …

MeDReaders: a database for transcription factors that bind to methylated DNA

G Wang, X Luo, J Wang, J Wan, S Xia… - Nucleic acids …, 2018 - academic.oup.com
Understanding the molecular principles governing interactions between transcription factors
(TFs) and DNA targets is one of the main subjects for transcriptional regulation. Recently …

[HTML][HTML] Toward a mechanistic understanding of DNA methylation readout by transcription factors

JF Kribelbauer, XJ Lu, R Rohs, RS Mann… - Journal of molecular …, 2020 - Elsevier
Epigenetic DNA modification impacts gene expression, but the underlying molecular
mechanisms are only partly understood. Adding a methyl group to a cytosine base locally …

Evolving insights on how cytosine methylation affects protein–DNA binding

AC Dantas Machado, T Zhou, S Rao… - Briefings in …, 2015 - academic.oup.com
Many anecdotal observations exist of a regulatory effect of DNA methylation on gene
expression. However, in general, the underlying mechanisms of this effect are poorly …

DNA methylation presents distinct binding sites for human transcription factors

S Hu, J Wan, Y Su, Q Song, Y Zeng, HN Nguyen… - elife, 2013 - elifesciences.org
DNA methylation, especially CpG methylation at promoter regions, has been generally
considered as a potent epigenetic modification that prohibits transcription factor (TF) …

Impact of cytosine methylation on DNA binding specificities of human transcription factors

Y Yin, E Morgunova, A Jolma, E Kaasinen, B Sahu… - Science, 2017 - science.org
INTRODUCTION Nearly all cells in the human body share the same primary genome
sequence consisting of four nucleotide bases. One of the bases, cytosine, is commonly …

Sensitivity of transcription factors to DNA methylation

É Héberlé, AF Bardet - Essays in biochemistry, 2019 - portlandpress.com
Dynamic binding of transcription factors (TFs) to regulatory elements controls transcriptional
states throughout organism development. Epigenetics modifications, such as DNA …

Effects of DNA methylation on TFs in human embryonic stem cells

X Luo, T Zhang, Y Zhai, F Wang, S Zhang… - Frontiers in genetics, 2021 - frontiersin.org
DNA methylation is an important epigenetic mechanism for gene regulation. The
conventional view of DNA methylation is that DNA methylation could disrupt protein-DNA …

Toward a base-resolution panorama of the in vivo impact of cytosine methylation on transcription factor binding

A Hernandez-Corchado, HS Najafabadi - Genome Biology, 2022 - Springer
Abstract Background While methylation of CpG dinucleotides is traditionally considered
antagonistic to the DNA-binding activity of most transcription factors (TFs), recent in vitro …