Molecular dynamics studies of hexamers of amyloid‐β peptide (16–35) and its mutants: Influence of charge states on amyloid formation

W Han, YD Wu - Proteins: Structure, Function, and …, 2007 - Wiley Online Library
To study the early stage of amyloid‐β peptide (Aβ) aggregation, hexamers of the wild‐type
(WT) Aβ16–35 and its mutants with amyloid‐like conformations have been studied by …

Oligomerization of amyloid Aβ16–22 peptides using hydrogen bonds and hydrophobicity forces

G Favrin, A Irbäck, S Mohanty - Biophysical Journal, 2004 - cell.com
Abstract The 16–22 amino-acid fragment of the β-amyloid peptide associated with the
Alzheimer's disease, Aβ, is capable of forming amyloid fibrils. Here we study the aggregation …

[HTML][HTML] Role of β-hairpin formation in aggregation: the self-assembly of the amyloid-β (25–35) peptide

L Larini, JE Shea - Biophysical journal, 2012 - cell.com
Abstract The amyloid-β (25–35) peptide plays a key role in the etiology of Alzheimer's
disease due to its extreme toxicity even in the absence of aging. Because of its high …

Stability and structure of oligomers of the Alzheimer peptide Aβ16–22: from the dimer to the 32-mer

UF Röhrig, A Laio, N Tantalo, M Parrinello… - Biophysical journal, 2006 - cell.com
Several neurodegenerative diseases such as Alzheimer's, Parkinson's, and Huntington's
diseases are associated with amyloid fibrils formed by different polypeptides. We probe the …

The effects of different glycosaminoglycans on the structure and aggregation of the amyloid-β (16–22) peptide

S Samantray, B Strodel - The Journal of Physical Chemistry B, 2021 - ACS Publications
Aggregates of the amyloid-β (Aβ) peptide are implicated as a causative substance in
Alzheimer's disease. Molecular dynamics simulations provide valuable contributions for …

Effect of Taiwan mutation (D7H) on structures of amyloid-β peptides: replica exchange molecular dynamics study

PM Truong, MH Viet, PH Nguyen… - The Journal of Physical …, 2014 - ACS Publications
Recent experiments have shown that the Taiwan mutation (D7H) slows the fibril formation of
amyloid peptides Aβ40 and Aβ42. Motivated by this finding, we have studied the influence of …

General Dynamic Properties of Aβ12–36 Amyloid Peptide Involved in Alzheimer's Disease from Unfolding Simulation

S Suzuki, OV Galzitskaya, D Mitomo… - Journal of …, 2004 - academic.oup.com
To study the folding/unfolding properties of a β-amyloid peptide Aβ12–36 of Alzheimer's
disease, five molecular dynamics simulations of Aβ12–36 in explicit water were done at 450 …

Molecular modeling of two distinct triangular oligomers in amyloid β-protein

J Zheng, X Yu, J Wang, JC Yang… - The journal of physical …, 2010 - ACS Publications
Amyloid-β (Aβ) peptides exhibit many distinct structural morphology at the early aggregate
stage, some of which are biological relevant to the pathogenesis of Alzheimer's disease …

Dissociation of Aβ16–22 amyloid fibrils probed by molecular dynamics

T Takeda, DK Klimov - Journal of molecular biology, 2007 - Elsevier
The mechanisms of deposition and dissociation are implicated in the assembly of amyloid
fibrils. To investigate the kinetics of unbinding of Aβ16–22 monomers from preformed fibrils …

Conformational transition of amyloid β-peptide

Y Xu, J Shen, X Luo, W Zhu, K Chen… - Proceedings of the …, 2005 - National Acad Sciences
The amyloid β-peptides (Aβs), containing 39–43 residues, are the key protein components
of amyloid deposits in Alzheimer's disease. To structurally characterize the dynamic …