EMPIAR: the electron microscopy public image archive
A Iudin, PK Korir, S Somasundharam… - Nucleic Acids …, 2023 - academic.oup.com
Public archiving in structural biology is well established with the Protein Data Bank (PDB;
wwPDB. org) catering for atomic models and the Electron Microscopy Data Bank (EMDB; …
wwPDB. org) catering for atomic models and the Electron Microscopy Data Bank (EMDB; …
[HTML][HTML] Trends in the electron microscopy data bank (EMDB)
A Patwardhan - Acta Crystallographica Section D: Structural Biology, 2017 - scripts.iucr.org
Recent technological advances, such as the introduction of the direct electron detector, have
transformed the field of cryo-EM and the landscape of molecular and cellular structural …
transformed the field of cryo-EM and the landscape of molecular and cellular structural …
EMPIAR: a public archive for raw electron microscopy image data
A Iudin, PK Korir, J Salavert-Torres, GJ Kleywegt… - Nature …, 2016 - nature.com
In discussions at workshops 1, 2 and conferences, the cryo-electron microscopy (EM)
community has repeatedly expressed the need for public archiving of raw 2D image data to …
community has repeatedly expressed the need for public archiving of raw 2D image data to …
[HTML][HTML] Focus: The interface between data collection and data processing in cryo-EM
We present a new software package called Focus that interfaces cryo-transmission electron
microscopy (cryo-EM) data collection with computer image processing. Focus creates a user …
microscopy (cryo-EM) data collection with computer image processing. Focus creates a user …
Appion: an integrated, database-driven pipeline to facilitate EM image processing
The use of cryoEM and three-dimensional image reconstruction is becoming increasingly
common. Our vision for this technique is to provide a straightforward manner in which users …
common. Our vision for this technique is to provide a straightforward manner in which users …
Electron microscopy (big and small) data analysis with the open source software package HyperSpy
F de la Peña, T Ostasevicius, VT Fauske… - Microscopy and …, 2017 - cambridge.org
Advances in scientific instrumentation, driven by the evolving needs of science and
technology, are dramatically increasing the amount of experimental data generated …
technology, are dramatically increasing the amount of experimental data generated …
Xmipp 3.0: an improved software suite for image processing in electron microscopy
JM De la Rosa-Trevín, J Otón, R Marabini… - Journal of structural …, 2013 - Elsevier
Xmipp is a specialized software package for image processing in electron microscopy, and
that is mainly focused on 3D reconstruction of macromolecules through single-particles …
that is mainly focused on 3D reconstruction of macromolecules through single-particles …
EMDataBank. org: unified data resource for CryoEM
CL Lawson, ML Baker, C Best, C Bi… - Nucleic acids …, 2010 - academic.oup.com
Cryo-electron microscopy reconstruction methods are uniquely able to reveal structures of
many important macromolecules and macromolecular complexes. EMDataBank. org, a joint …
many important macromolecules and macromolecular complexes. EMDataBank. org, a joint …
Bsoft: image and molecular processing in electron microscopy
JB Heymann - Journal of structural biology, 2001 - Elsevier
Software for the processing of electron micrographs in structural biology suffers from
incompatibility between different packages, poor definition and choice of conventions, and a …
incompatibility between different packages, poor definition and choice of conventions, and a …
Big data in cryoEM: automated collection, processing and accessibility of EM data
Highlights•Cryogenic electron microscopy has been evolving towards a big data field.•Movie-
mode collection and automation has increased throughput.•Improved processing pipelines …
mode collection and automation has increased throughput.•Improved processing pipelines …