Subgenome-aware analyses reveal the genomic consequences of ancient allopolyploid hybridizations throughout the cotton family
P Sun, Z Lu, Z Wang, S Wang, K Zhao… - Proceedings of the …, 2024 - National Acad Sciences
Malvaceae comprise some 4,225 species in 243 genera and nine subfamilies and include
economically important species, such as cacao, cotton, durian, and jute, with cotton an …
economically important species, such as cacao, cotton, durian, and jute, with cotton an …
Comparative genomics of Gossypium and Arabidopsis: unraveling the consequences of both ancient and recent polyploidy
J Rong, JE Bowers, SR Schulze… - Genome …, 2005 - genome.cshlp.org
Both ancient and recent polyploidy, together with post-polyploidization loss of many
duplicated gene copies, complicates angiosperm comparative genomics. To explore an …
duplicated gene copies, complicates angiosperm comparative genomics. To explore an …
Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton
Background Modern allotetraploid cotton contains an “A” and “D” genome from an ancestral
polyploidy event that occurred approximately 1–2 million years ago. Diploid A-and D …
polyploidy event that occurred approximately 1–2 million years ago. Diploid A-and D …
Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes
S Wang, J Chen, W Zhang, Y Hu, L Chang, L Fang… - Genome biology, 2015 - Springer
Background SNPs are the most abundant polymorphism type, and have been explored in
many crop genomic studies, including rice and maize. SNP discovery in allotetraploid cotton …
many crop genomic studies, including rice and maize. SNP discovery in allotetraploid cotton …
Persistence of subgenomes in paleopolyploid cotton after 60 my of evolution
The importance of whole-genome multiplication (WGM) in plant evolution has long been
recognized. In flowering plants, WGM is both ubiquitous and in many lineages cyclical, each …
recognized. In flowering plants, WGM is both ubiquitous and in many lineages cyclical, each …
Dual domestication, diversity, and differential introgression in Old World cotton diploids
CE Grover, MA Arick, A Thrash… - Genome Biology and …, 2022 - academic.oup.com
Domestication in the cotton genus is remarkable in that it has occurred independently four
different times at two different ploidy levels. Relatively little is known about genome evolution …
different times at two different ploidy levels. Relatively little is known about genome evolution …
Extensive intraspecific gene order and gene structural variations in upland cotton cultivars
Z Yang, X Ge, Z Yang, W Qin, G Sun, Z Wang… - Nature …, 2019 - nature.com
Multiple cotton genomes (diploid and tetraploid) have been assembled. However, genomic
variations between cultivars of allotetraploid upland cotton (Gossypium hirsutum L.), the …
variations between cultivars of allotetraploid upland cotton (Gossypium hirsutum L.), the …
Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing
JT Page, MD Huynh, ZS Liechty, K Grupp… - G3: Genes …, 2013 - academic.oup.com
Understanding the composition, evolution, and function of the Gossypium hirsutum (cotton)
genome is complicated by the joint presence of two genomes in its nucleus (AT and DT …
genome is complicated by the joint presence of two genomes in its nucleus (AT and DT …
Jeans, genes, and genomes: cotton as a model for studying polyploidy
We present an overview of the cotton genus (Gossypium) as a model for the study of
polyploidy. A synopsis of the origin and evolution of polyploid cotton is provided, offering an …
polyploidy. A synopsis of the origin and evolution of polyploid cotton is provided, offering an …
Parallel and intertwining threads of domestication in allopolyploid cotton
The two cultivated allopolyploid cottons, Gossypium hirsutum and Gossypium barbadense,
represent a remarkable example of parallel independent domestication, both involving …
represent a remarkable example of parallel independent domestication, both involving …