Computational design of peptide ligands

P Vanhee, AM van der Sloot, E Verschueren… - Trends in …, 2011 - cell.com
Peptides possess several attractive features when compared to small molecule and protein
therapeutics, such as high structural compatibility with target proteins, the ability to disrupt …

Computational peptidology: a new and promising approach to therapeutic peptide design

P Zhou, C Wang, Y Ren, C Yang… - Current Medicinal …, 2013 - ingentaconnect.com
The recent focus on protein-protein interaction networks has increasingly been shifted
towards the disruption of protein complexes, which either are mediated by the binding of a …

Recapitulation and design of protein binding peptide structures and sequences

VD Sood, D Baker - Journal of molecular biology, 2006 - Elsevier
An important objective of computational protein design is the generation of high affinity
peptide inhibitors of protein–peptide interactions, both as a precursor to the development of …

[HTML][HTML] Targeting Protein–Protein Interfaces with Peptides: The Contribution of Chemical Combinatorial Peptide Library Approaches

A Monti, L Vitagliano, A Caporale, M Ruvo… - International journal of …, 2023 - mdpi.com
Protein–protein interfaces play fundamental roles in the molecular mechanisms underlying
pathophysiological pathways and are important targets for the design of compounds of …

Peptidic modulators of protein‐protein interactions: progress and challenges in computational design

M Rubinstein, MY Niv - Biopolymers: Original Research on …, 2009 - Wiley Online Library
With the decline in productivity of drug‐development efforts, novel approaches to rational
drug design are being introduced and developed. Naturally occurring and synthetic peptides …

[HTML][HTML] A comprehensive review on current advances in peptide drug development and design

ACL Lee, JL Harris, KK Khanna, JH Hong - International journal of …, 2019 - mdpi.com
Protein–protein interactions (PPIs) execute many fundamental cellular functions and have
served as prime drug targets over the last two decades. Interfering intracellular PPIs with …

[HTML][HTML] Protein–peptide docking: opportunities and challenges

M Ciemny, M Kurcinski, K Kamel, A Kolinski, N Alam… - Drug discovery today, 2018 - Elsevier
Highlights•We provide an overview of protein-peptide docking methods and their
applications.•Peptide docking tools can be divided on template-based, local and global …

[HTML][HTML] Towards rational computational peptide design

L Chang, A Mondal, A Perez - Frontiers in Bioinformatics, 2022 - frontiersin.org
Peptides are prevalent in biology, mediating as many as 40% of protein-protein interactions,
and involved in other cellular functions such as transport and signaling. Their ability to bind …

Peptide docking and structure-based characterization of peptide binding: from knowledge to know-how

N London, B Raveh, O Schueler-Furman - Current opinion in structural …, 2013 - Elsevier
Highlights•Accrual of peptide–protein complex structures allowed their detailed
characterization.•This has lead to rapid progress in peptide docking, based on diverse …

[HTML][HTML] Bioinformatics and biosimulations as toolbox for peptides and peptidomimetics design: where are we?

I D'Annessa, FS Di Leva, A La Teana… - Frontiers in Molecular …, 2020 - frontiersin.org
Peptides and peptidomimetics are strongly re-emerging as amenable candidates in the
development of therapeutic strategies against a plethora of pathologies. In particular, these …