Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

JC Schnable, NM Springer… - Proceedings of the …, 2011 - National Acad Sciences
Ancient tetraploidies are found throughout the eukaryotes. After duplication, one copy of
each duplicate gene pair tends to be lost (fractionate). For all studied tetraploidies, the loss …

Gene fractionation and function in the ancient subgenomes of maize

S Renny-Byfield, E Rodgers-Melnick… - … biology and evolution, 2017 - academic.oup.com
The maize genome experienced an ancient whole genome duplication∼ 10 MYA and the
duplicate subgenomes have since experienced reciprocal gene loss such that many genes …

Patterns and consequences of subgenome differentiation provide insights into the nature of paleopolyploidy in plants

M Zhao, B Zhang, D Lisch, J Ma - The Plant Cell, 2017 - academic.oup.com
Polyploidy is an important feature of plant genomes, but the nature of many polyploidization
events remains to be elucidated. Here, we demonstrate that the evolutionary fates of the …

Organization and variability of the maize genome

J Messing, HK Dooner - Current opinion in plant biology, 2006 - Elsevier
With a size approximating that of the human genome, the maize genome is about to become
the largest plant genome yet sequenced. Contributing to that size are a whole-genome …

Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize

JC Schnable, M Freeling - PloS one, 2011 - journals.plos.org
Not all genes are created equal. Despite being supported by sequence conservation and
expression data, knockout homozygotes of many genes show no visible effects, at least …

Molecular and functional diversity of maize

ES Buckler, BS Gaut, MD McMullen - Current opinion in plant biology, 2006 - Elsevier
Over the past 10 000 years, man has used the rich genetic diversity of the maize genome as
the raw material for domestication and subsequent crop improvement. Recent research …

Open chromatin reveals the functional maize genome

E Rodgers-Melnick, DL Vera… - Proceedings of the …, 2016 - National Acad Sciences
Cellular processes mediated through nuclear DNA must contend with chromatin. Chromatin
structural assays can efficiently integrate information across diverse regulatory elements …

[图书][B] Handbook of maize: its biology

JL Bennetzen, SC Hake - 2009 - Springer
Maize is one of the world's highest value crops, with a multibillion dollar annual contribution
to agriculture. The great adaptability and high yields available for maize as a food, feed and …

Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homeologs

MR Woodhouse, JC Schnable, BS Pedersen… - PLoS …, 2010 - journals.plos.org
Previous work in Arabidopsis showed that after an ancient tetraploidy event, genes were
preferentially removed from one of the two homeologs, a process known as fractionation …

Gene loss and movement in the maize genome

J Lai, J Ma, Z Swigoňová, W Ramakrishna… - Genome …, 2004 - genome.cshlp.org
Maize (Zea mays L. ssp. mays), one of the most important agricultural crops in the world,
originated by hybridization of two closely related progenitors. To investigate the fate of its …