[HTML][HTML] Regulation of bacterial DNA packaging in early stationary phase by competitive DNA binding of Dps and IHF

SY Lee, CJ Lim, P Dröge, J Yan - Scientific Reports, 2015 - nature.com
The bacterial nucleoid, a bacterial genome packed by nucleoid binding proteins, forms the
physical basis for cellular processes such as gene transcription and DNA replication …

Bacteriophage protein Gp46 is a cross-species inhibitor of nucleoid-associated HU proteins

P Zhang, X Zhao, Y Wang, K Du… - Proceedings of the …, 2022 - National Acad Sciences
The architectural protein histone-like protein from Escherichia coli strain U93 (HU) is the
most abundant bacterial DNA binding protein and highly conserved among bacteria and …

[HTML][HTML] DNA sequence-directed cooperation between nucleoid-associated proteins

A Japaridze, W Yang, C Dekker, W Nasser… - Iscience, 2021 - cell.com
Nucleoid-associated proteins (NAPs) are a class of highly abundant DNA-binding proteins
in bacteria and archaea. While both the composition and relative abundance of the NAPs …

Dual architectural roles of HU: formation of flexible hinges and rigid filaments

J van Noort, S Verbrugge, N Goosen… - Proceedings of the …, 2004 - National Acad Sciences
The nucleoid-associated protein HU is one of the most abundant proteins in Escherichia coli
and has been suggested to play an important role in bacterial nucleoid organization and …

Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome

DC Grainger, D Hurd, MD Goldberg… - Nucleic acids …, 2006 - academic.oup.com
The Escherichia coli chromosome is condensed into an ill-defined structure known as the
nucleoid. Nucleoid-associated DNA-binding proteins are involved in maintaining this …

Function of nucleoid-associated proteins in chromosome structuring and transcriptional regulation

CJ Dorman - Journal of molecular microbiology and biotechnology, 2015 - karger.com
Nucleoid-associated proteins typically are abundant, low-molecular-mass polypeptides that
bind DNA and alter its shape and its ability to participate in transactions such as …

DNA binding mode transitions of Escherichia coli HUαβ: Evidence for formation of a bent DNA—protein complex on intact, linear duplex DNA

J Koh, RM Saecker, MT Record Jr - Journal of molecular biology, 2008 - Elsevier
Escherichia coli HUαβ, a major nucleoid-associated protein, organizes chromosomal DNA
and facilitates numerous DNA transactions. Using isothermal titration calorimetry …

Clarification of the dimerization domain and its functional significance for the Escherichia coli nucleoid protein H-NS

C Ueguchi, C Seto, T Suzuki, T Mizuno - Journal of molecular biology, 1997 - Elsevier
The Escherichia coli nucleoid protein, H-NS, functions as a global regulator for expression of
a wide variety of genes. We recently analyzed the structure-function relationship of H-NS …

Chimeric HU-IHF proteins that alter DNA-binding ability

G Naoki, I Yuji, O Hitoshi, T Hiromitsu, H Naotaka… - Gene, 1992 - Elsevier
Chimeric proteins between Escherichia coli histone-like HU and IHF were constructed by
genetic engineering, in which part of the arm region was replaced by the corresponding …

[HTML][HTML] Genes on a Wire: The Nucleoid-Associated Protein HU Insulates Transcription Units in Escherichia coli

M Berger, V Gerganova, P Berger, R Rapiteanu… - Scientific Reports, 2016 - nature.com
The extent to which chromosomal gene position in prokaryotes affects local gene expression
remains an open question. Several studies have shown that chromosomal re-positioning of …