[HTML][HTML] H-NS can facilitate specific DNA-binding by RNA polymerase in AT-rich gene regulatory regions

SS Singh, DC Grainger - PLoS genetics, 2013 - journals.plos.org
Extremely AT-rich DNA sequences present a challenging template for specific recognition by
RNA polymerase. In bacteria, this is because the promoter− 10 hexamer, the major DNA …

The osmZ (bglY) gene encodes the DNA-binding protein H-NS (H1a), a component of the Escherichia coli K12 nucleoid

G May, P Dersch, M Haardt, A Middendorf… - Molecular and General …, 1990 - Springer
A class of trans-acting mutations, which alter the osmoregulated expression of the
Escherichia coli proU operon, maps at 27 min on the chromosome in a locus we have called …

High-affinity DNA binding of HU protein from the hyperthermophile Thermotoga maritima

A Grove, L Lim - Journal of Molecular Biology, 2001 - Elsevier
Prokaryotic genomes are compacted by association with small basic proteins, generating
what has been termed bacterial chromatin. The ubiquitous DNA-binding protein HU serves …

H-NS: a universal regulator for a dynamic genome

CJ Dorman - Nature Reviews Microbiology, 2004 - nature.com
The effect of the bacterial heat-stable nucleoid-structuring (H-NS) protein on gene
expression is overwhelmingly negative and extends throughout the genome, pointing to an …

Common fold in helix–hairpin–helix proteins

X Shao, NV Grishin - Nucleic acids research, 2000 - academic.oup.com
Abstract Helix–hairpin–helix (HhH) is a widespread motif involved in non-sequence-specific
DNA binding. The majority of HhH motifs function as DNA-binding modules, however, some …

HU‐α binds to the putative double‐stranded DNA mimic HI1450 from Haemophilus influenzae

LM Parsons, F Liu, J Orban - Protein science, 2005 - Wiley Online Library
Recently, the solution structure of the hypothetical protein HI1450 from Haemophilus
influenzae was solved as part of a structure‐based effort to understand function. The …

Characterization of the binding of HU and IHF, homologous histone-like proteins of Escherichia coli, to curved and uncurved DNA

M Shimizu, M Miyake, F Kanke, U Matsumoto… - … et Biophysica Acta (BBA …, 1995 - Elsevier
The binding of E. coli histone-like protein HU to curved and uncurved DNA fragments
containing adenine tracts was characterized by relative binding affinity assay, and compared …

[HTML][HTML] EbfC/YbaB: a widely distributed nucleoid-associated protein in prokaryotes

TFVB Cordeiro, MTP Gontijo, GP Jorge, M Brocchi - Microorganisms, 2022 - mdpi.com
Genomic compaction is an essential characteristic of living organisms. Nucleoid-associated
proteins (NAPs) are a group of small proteins that play crucial roles in chromosome …

Escherichia coli Histone-Like Protein H-NS Preferentially Binds to Horizontally Acquired DNA in Association with RNA Polymerase

T Oshima, S Ishikawa, K Kurokawa, H Aiba… - DNA …, 2006 - academic.oup.com
Heat-stable nucleoid-structuring protein (H-NS) is one of the main nucleoid proteins
expressed in exponentially growing Escherichia coli cells. In addition to a role in nucleoid …

Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp

MA Schumacher, RR Singh… - Nucleic Acids Research, 2024 - academic.oup.com
Nucleoid-associated proteins (NAPs) play central roles in bacterial chromosome
organization and DNA processes. The Escherichia coli YejK protein is a highly abundant …