Pause & go: from the discovery of RNA polymerase pausing to its functional implications

A Mayer, HM Landry, LS Churchman - Current opinion in cell biology, 2017 - Elsevier
The synthesis of nascent RNA is a discontinuous process in which phases of productive
elongation by RNA polymerase are interrupted by frequent pauses. Transcriptional pausing …

A two-way street: regulatory interplay between RNA polymerase and nascent RNA structure

J Zhang, R Landick - Trends in biochemical sciences, 2016 - cell.com
The vectorial (5′-to-3′ at varying velocity) synthesis of RNA by cellular RNA polymerases
(RNAPs) creates a rugged kinetic landscape, demarcated by frequent, sometimes long …

Promoter-proximal pausing of RNA polymerase II: a nexus of gene regulation

L Core, K Adelman - Genes & development, 2019 - genesdev.cshlp.org
Precise spatio–temporal control of gene activity is essential for organismal development,
growth, and survival in a changing environment. Decisive steps in gene regulation involve …

Regulation of promoter proximal pausing of RNA polymerase II in metazoans

R Dollinger, DS Gilmour - Journal of molecular biology, 2021 - Elsevier
Regulation of transcription is a tightly choreographed process. The establishment of RNA
polymerase II promoter proximal pausing soon after transcription initiation and the release of …

Comprehensive analysis of promoter-proximal RNA polymerase II pausing across mammalian cell types

DS Day, B Zhang, SM Stevens, F Ferrari, EN Larschan… - Genome biology, 2016 - Springer
Background For many genes, RNA polymerase II stably pauses before transitioning to
productive elongation. Although polymerase II pausing has been shown to be a mechanism …

Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans

K Adelman, JT Lis - Nature Reviews Genetics, 2012 - nature.com
Recent years have witnessed a sea change in our understanding of transcription regulation:
whereas traditional models focused solely on the events that brought RNA polymerase II …

Screening thousands of transcribed coding and non-coding regions reveals sequence determinants of RNA polymerase II elongation potential

H Vlaming, CA Mimoso, AR Field, BJE Martin… - Nature structural & …, 2022 - nature.com
Precise regulation of transcription by RNA polymerase II (RNAPII) is critical for organismal
growth and development. However, what determines whether an engaged RNAPII will …

[PDF][PDF] Stable pausing by RNA polymerase II provides an opportunity to target and integrate regulatory signals

T Henriques, DA Gilchrist, S Nechaev, M Bern… - Molecular cell, 2013 - cell.com
Metazoan gene expression is often regulated after the recruitment of RNA polymerase II (Pol
II) to promoters, through the controlled release of promoter-proximally paused Pol II into …

Conserved DNA sequence features underlie pervasive RNA polymerase pausing

M Gajos, O Jasnovidova, A van Bömmel… - Nucleic acids …, 2021 - academic.oup.com
Pausing of transcribing RNA polymerase is regulated and creates opportunities to control
gene expression. Research in metazoans has so far mainly focused on RNA polymerase II …

Paused RNA polymerase II inhibits new transcriptional initiation

W Shao, J Zeitlinger - Nature genetics, 2017 - nature.com
Abstract RNA polymerase II (Pol II) pauses downstream of the transcription initiation site
before beginning productive elongation. This pause is a key component of metazoan gene …