Diploid-dominant life cycles characterize the early evolution of Fungi

KR Amses, DR Simmons… - Proceedings of the …, 2022 - National Acad Sciences
Most of the described species in kingdom Fungi are contained in two phyla, the Ascomycota
and the Basidiomycota (subkingdom Dikarya). As a result, our understanding of the biology …

Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota

LJ Galindo, P López-García, G Torruella… - Nature …, 2021 - nature.com
Compared to multicellular fungi and unicellular yeasts, unicellular fungi with free-living
flagellated stages (zoospores) remain poorly known and their phylogenetic position is often …

A consistent phylogenetic backbone for the fungi

I Ebersberger, R de Matos Simoes… - Molecular Biology …, 2012 - academic.oup.com
The kingdom of fungi provides model organisms for biotechnology, cell biology, genetics,
and life sciences in general. Only when their phylogenetic relationships are stably resolved …

Phylogenomic insights into the early diversification of fungi

JFH Strassert, MT Monaghan - Current Biology, 2022 - cell.com
Phylogenomic analyses have boosted our understanding of the evolutionary trajectories of
all living forms by providing continuous improvements to the tree of life. 1, 2, 3, 4, 5 Within …

A genome-scale phylogeny of the kingdom Fungi

Y Li, JL Steenwyk, Y Chang, Y Wang, TY James… - Current Biology, 2021 - cell.com
Phylogenomic studies using genome-scale amounts of data have greatly improved
understanding of the tree of life. Despite the diversity, ecological significance, and …

Loss of the flagellum happened only once in the fungal lineage: phylogenetic structure of kingdom Fungi inferred from RNA polymerase II subunit genes

YJ Liu, MC Hodson, BD Hall - BMC Evolutionary Biology, 2006 - Springer
Background At present, there is not a widely accepted consensus view regarding the
phylogenetic structure of kingdom Fungi although two major phyla, Ascomycota and …

Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota

XX Shen, JL Steenwyk, AL LaBella, DA Opulente… - Science …, 2020 - science.org
Ascomycota, the largest and most well-studied phylum of fungi, contains three subphyla:
Saccharomycotina (budding yeasts), Pezizomycotina (filamentous fungi), and …

Fungal evolution: diversity, taxonomy and phylogeny of the Fungi

MA Naranjo‐Ortiz, T Gabaldón - Biological Reviews, 2019 - Wiley Online Library
The fungal kingdom comprises a hyperdiverse clade of heterotrophic eukaryotes
characterized by the presence of a chitinous cell wall, the loss of phagotrophic capabilities …

Genomes of fungi and relatives reveal delayed loss of ancestral gene families and evolution of key fungal traits

Z Merényi, K Krizsán, N Sahu, XB Liu, B Bálint… - Nature Ecology & …, 2023 - nature.com
Fungi are ecologically important heterotrophs that have radiated into most niches on Earth
and fulfil key ecological services. Despite intense interest in their origins, major genomic …

Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains

G Torruella, R Derelle, J Paps, BF Lang… - Molecular biology …, 2012 - academic.oup.com
Many of the eukaryotic phylogenomic analyses published to date were based on alignments
of hundreds to thousands of genes. Frequently, in such analyses, the most realistic …