DEML: drug synergy and interaction prediction using ensemble-based multi-task learning

Z Wang, J Dong, L Wu, C Dai, J Wang, Y Wen, Y Zhang… - Molecules, 2023 - mdpi.com
Synergistic drug combinations have demonstrated effective therapeutic effects in cancer
treatment. Deep learning methods accelerate identification of novel drug combinations by …

Trustworthy deep neural network for inferring anticancer synergistic combinations

MA Alsherbiny, I Radwan, N Moustafa… - IEEE Journal of …, 2021 - ieeexplore.ieee.org
The lack of a gold standard synergy quantification method for chemotherapeutic drug
combinations warrants the consideration of different synergy metrics to develop efficient …

TranSynergy: Mechanism-driven interpretable deep neural network for the synergistic prediction and pathway deconvolution of drug combinations

Q Liu, L Xie - PLoS computational biology, 2021 - journals.plos.org
Drug combinations have demonstrated great potential in cancer treatments. They alleviate
drug resistance and improve therapeutic efficacy. The fast-growing number of anti-cancer …

DeepSynergy: predicting anti-cancer drug synergy with Deep Learning

K Preuer, RPI Lewis, S Hochreiter, A Bender… - …, 2018 - academic.oup.com
Motivation While drug combination therapies are a well-established concept in cancer
treatment, identifying novel synergistic combinations is challenging due to the size of …

PermuteDDS: a permutable feature fusion network for drug-drug synergy prediction

X Zhao, J Xu, Y Shui, M Xu, J Hu, X Liu, K Che… - Journal of …, 2024 - Springer
Motivation Drug combination therapies have shown promise in clinical cancer treatments.
However, it is hard to experimentally identify all drug combinations for synergistic interaction …

MFSynDCP: multi-source feature collaborative interactive learning for drug combination synergy prediction

Y Dong, Y Chang, Y Wang, Q Han, X Wen, Z Yang… - BMC …, 2024 - Springer
Drug combination therapy is generally more effective than monotherapy in the field of cancer
treatment. However, screening for effective synergistic combinations from a wide range of …

MMSyn: A New Multimodal Deep Learning Framework for Enhanced Prediction of Synergistic Drug Combinations

Y Pang, Y Chen, M Lin, Y Zhang… - Journal of Chemical …, 2024 - ACS Publications
Combination therapy is a promising strategy for the successful treatment of cancer. The
large number of possible combinations, however, mean that it is laborious and expensive to …

MDNNSyn: A Multi-Modal Deep Learning Framework for Drug Synergy Prediction

L Li, H Li, TO Ishdorj, C Zheng… - IEEE Journal of …, 2024 - ieeexplore.ieee.org
Synergistic drug combination prediction tasks based on the computational models have
been widely studied and applied in the cancer field. However, most of models only consider …

SynergyX: a multi-modality mutual attention network for interpretable drug synergy prediction

Y Guo, H Hu, W Chen, H Yin, J Wu… - Briefings in …, 2024 - academic.oup.com
Discovering effective anti-tumor drug combinations is crucial for advancing cancer therapy.
Taking full account of intricate biological interactions is highly important in accurately …

Interpreting the mechanism of synergism for drug combinations using attention-based hierarchical graph pooling

Z Dong, H Zhang, Y Chen, PRO Payne, F Li - Cancers, 2023 - mdpi.com
Simple Summary This paper introduces a novel graph neural network (a hierarchical graph
pooling model), SANEpool, to effectively detect core sub-networks of significant genes for …