Identifying compound-target associations by combining bioactivity profile similarity search and public databases mining
Molecular target identification is of central importance to drug discovery. Here, we
developed a computational approach, named bioactivity profile similarity search (BASS), for …
developed a computational approach, named bioactivity profile similarity search (BASS), for …
Investigating the correlations among the chemical structures, bioactivity profiles and molecular targets of small molecules
T Cheng, Y Wang, SH Bryant - Bioinformatics, 2010 - academic.oup.com
Motivation: Most of the previous data mining studies based on the NCI-60 dataset, due to its
intrinsic cell-based nature, can hardly provide insights into the molecular targets for …
intrinsic cell-based nature, can hardly provide insights into the molecular targets for …
Polypharmacology directed compound data mining: identification of promiscuous chemotypes with different activity profiles and comparison to approved drugs
Y Hu, J Bajorath - Journal of chemical information and modeling, 2010 - ACS Publications
Increasing evidence that many pharmaceutically relevant compounds elicit their effects
through binding to multiple targets, so-called polypharmacology, is beginning to change …
through binding to multiple targets, so-called polypharmacology, is beginning to change …
PubChem structure–activity relationship (SAR) clusters
Background Developing structure–activity relationships (SARs) of molecules is an important
approach in facilitating hit exploration in the early stage of drug discovery. Although …
approach in facilitating hit exploration in the early stage of drug discovery. Although …
Bioturbo similarity searching: combining chemical and biological similarity to discover structurally diverse bioactive molecules
AM Wassermann, E Lounkine… - Journal of chemical …, 2013 - ACS Publications
Virtual screening using bioactivity profiles has become an integral part of currently applied
hit finding methods in pharmaceutical industry. However, a significant drawback of this …
hit finding methods in pharmaceutical industry. However, a significant drawback of this …
Data mining of protein-binding profiling data identifies structural modifications that distinguish selective and promiscuous compounds
AB Yongye, JL Medina-Franco - Journal of chemical information …, 2012 - ACS Publications
Activity profiling of compound collections across multiple targets is increasingly being used
in probe and drug discovery. Herein, we discuss an approach to systematically analyzing …
in probe and drug discovery. Herein, we discuss an approach to systematically analyzing …
Identification of target associations for polypharmacology from analysis of crystallographic ligands of the Protein Data Bank
L Pinzi, G Rastelli - Journal of Chemical Information and Modeling, 2019 - ACS Publications
The design of a chemical entity that potently and selectively binds to a biological target of
therapeutic relevance has dominated the scene of drug discovery so far. However, recent …
therapeutic relevance has dominated the scene of drug discovery so far. However, recent …
A survey of across-target bioactivity results of small molecules in PubChem
L Han, Y Wang, SH Bryant - Bioinformatics, 2009 - academic.oup.com
This work provides an analysis of across-target bioactivity results in the screening data
deposited in PubChem. Two alternative approaches for grouping-related targets are used to …
deposited in PubChem. Two alternative approaches for grouping-related targets are used to …
Automated structure–activity relationship mining: connecting chemical structure to biological profiles
MJ Wawer, DE Jaramillo, V Dančík… - Journal of …, 2014 - journals.sagepub.com
Understanding the structure–activity relationships (SARs) of small molecules is important for
developing probes and novel therapeutic agents in chemical biology and drug discovery …
developing probes and novel therapeutic agents in chemical biology and drug discovery …
Predicting polypharmacology by binding site similarity: from kinases to the protein universe
F Milletti, A Vulpetti - Journal of chemical information and …, 2010 - ACS Publications
Polypharmacology is receiving increasing attention in the pharmaceutical industry, since
finding new targets of a compound is useful not only for anticipating possible side effects but …
finding new targets of a compound is useful not only for anticipating possible side effects but …