Metabolite profiling and beyond: approaches for the rapid processing and annotation of human blood serum mass spectrometry data

J Stanstrup, M Gerlich, LO Dragsted… - Analytical and …, 2013 - Springer
In this paper, we describe data processing and metabolite identification approaches which
lead to a rapid and semi-automated interpretation of metabolomics experiments. Data from …

IDSL. CSA: composite spectra analysis for chemical annotation of untargeted metabolomics datasets

SF Baygi, Y Kumar, DK Barupal - Analytical chemistry, 2023 - ACS Publications
Poor chemical annotation of high-resolution mass spectrometry data limits applications of
untargeted metabolomics datasets. Our new software, the Integrated Data Science …

Software tools and approaches for compound identification of LC-MS/MS data in metabolomics

I Blaženović, T Kind, J Ji, O Fiehn - Metabolites, 2018 - mdpi.com
The annotation of small molecules remains a major challenge in untargeted mass
spectrometry-based metabolomics. We here critically discuss structured elucidation …

Current challenges and recent developments in mass spectrometry–based metabolomics

SL Collins, I Koo, JM Peters, PB Smith… - Annual review of …, 2021 - annualreviews.org
High-resolution mass spectrometry (MS) has advanced the study of metabolism in living
systems by allowing many metabolites to be measured in a single experiment. Although …

New sample preparation approach for mass spectrometry-based profiling of plasma results in improved coverage of metabolome

Y Yang, C Cruickshank, M Armstrong… - … of chromatography A, 2013 - Elsevier
Sample preparation remains a challenge in untargeted metabolomics studies and no
method currently results in complete extraction of all metabolite classes in human plasma …

Recurrent topics in mass spectrometry-based metabolomics and lipidomics—standardization, coverage, and throughput

E Rampler, YE Abiead, H Schoeny, M Rusz… - Analytical …, 2020 - ACS Publications
We have come a long way in the last years of developing analytical strategies in
metabolomics. We have seen huge progress in tackling multiplatform measurement, data …

Analysis of human plasma metabolites across different liquid chromatography/mass spectrometry platforms: Cross‐platform transferable chemical signatures

KH Telu, X Yan, WE Wallace, SE Stein… - Rapid …, 2016 - Wiley Online Library
Rationale The metabolite profiling of a NIST plasma Standard Reference Material (SRM
1950) on different liquid chromatography/mass spectrometry (LC/MS) platforms showed …

Metabolomic profiling of biological reference materials using a multiplatform high-resolution mass spectrometric approach

JJ Aristizabal-Henao, DJ Lemas, EK Griffin… - Journal of the …, 2021 - ACS Publications
The number of metabolomics studies have increased dramatically in recent years, spanning
from basic/mechanistic research to the identification and validation of clinical biomarkers …

[HTML][HTML] Molecular formula and METLIN Personal Metabolite Database matching applied to the identification of compounds generated by LC/TOF-MS

TR Sana, JC Roark, X Li, K Waddell… - Journal of biomolecular …, 2008 - ncbi.nlm.nih.gov
In an effort to simplify and streamline compound identification from metabolomics data
generated by liquid chromatography time-of-flight mass spectrometry, we have created …

Solvent-dependent metabolite distribution, clustering, and protein extraction for serum profiling with mass spectrometry

EJ Want, G O'Maille, CA Smith, TR Brandon… - Analytical …, 2006 - ACS Publications
The aim of metabolite profiling is to monitor all metabolites within a biological sample for
applications in basic biochemical research as well as pharmacokinetic studies and …