Understanding the impact of preprocessing pipelines on neuroimaging cortical surface analyses
Background The choice of preprocessing pipeline introduces variability in neuroimaging
analyses that affects the reproducibility of scientific findings. Features derived from structural …
analyses that affects the reproducibility of scientific findings. Features derived from structural …
[HTML][HTML] Fastsurfer-a fast and accurate deep learning based neuroimaging pipeline
Traditional neuroimage analysis pipelines involve computationally intensive, time-
consuming optimization steps, and thus, do not scale well to large cohort studies with …
consuming optimization steps, and thus, do not scale well to large cohort studies with …
[HTML][HTML] Micapipe: A pipeline for multimodal neuroimaging and connectome analysis
Multimodal magnetic resonance imaging (MRI) has accelerated human neuroscience by
fostering the analysis of brain microstructure, geometry, function, and connectivity across …
fostering the analysis of brain microstructure, geometry, function, and connectivity across …
CAT–A computational anatomy toolbox for the analysis of structural MRI data
A large range of sophisticated brain image analysis tools have been developed by the
neuroscience community, greatly advancing the field of human brain mapping. Here we …
neuroscience community, greatly advancing the field of human brain mapping. Here we …
The ANTs cortical thickness processing pipeline
Numerous studies have explored the relationship between cortical structure and brain
development, cognitive function, and functional connectivity. The highly convoluted cortical …
development, cognitive function, and functional connectivity. The highly convoluted cortical …
Direct cortical thickness estimation using deep learning‐based anatomy segmentation and cortex parcellation
Accurate and reliable measures of cortical thickness from magnetic resonance imaging are
an important biomarker to study neurodegenerative and neurological disorders …
an important biomarker to study neurodegenerative and neurological disorders …
[HTML][HTML] Variations in structural MRI quality significantly impact commonly used measures of brain anatomy
Subject motion can introduce noise into neuroimaging data and result in biased estimations
of brain structure. In-scanner motion can compromise data quality in a number of ways and …
of brain structure. In-scanner motion can compromise data quality in a number of ways and …
Harmonization of cortical thickness measurements across scanners and sites
With the proliferation of multi-site neuroimaging studies, there is a greater need for handling
non-biological variance introduced by differences in MRI scanners and acquisition …
non-biological variance introduced by differences in MRI scanners and acquisition …
Moving beyond processing and analysis-related variation in neuroscience
When fields lack consensus standards and ground truths for their analytic methods,
reproducibility can be more of an ideal than a reality. Such has been the case for functional …
reproducibility can be more of an ideal than a reality. Such has been the case for functional …
System for integrated neuroimaging analysis and processing of structure
Mapping brain structure in relation to neurological development, function, plasticity, and
disease is widely considered to be one of the most essential challenges for opening new …
disease is widely considered to be one of the most essential challenges for opening new …