PU. 1 target genes undergo Tet2-coupled demethylation and DNMT3b-mediated methylation in monocyte-to-osteoclast differentiation

L de la Rica, J Rodríguez-Ubreva, M García, AB Islam… - Genome biology, 2013 - Springer
Background DNA methylation is a key epigenetic mechanism for driving and stabilizing cell-
fate decisions. Local deposition and removal of DNA methylation are tightly coupled with …

Genome-wide DNA methylation profiles in hematopoietic stem and progenitor cells reveal overrepresentation of ETS transcription factor binding sites

A Hogart, J Lichtenberg, SS Ajay, S Anderson… - Genome …, 2012 - genome.cshlp.org
DNA methylation is an essential epigenetic mark that is required for normal development.
Knockout of the DNA methyltransferase enzymes in the mouse hematopoietic compartment …

Dynamic changes in the human methylome during differentiation

L Laurent, E Wong, G Li, T Huynh, A Tsirigos… - Genome …, 2010 - genome.cshlp.org
DNA methylation is a critical epigenetic regulator in mammalian development. Here, we
present a whole-genome comparative view of DNA methylation using bisulfite sequencing of …

Genome-wide analyses reveal a role of Polycomb in promoting hypomethylation of DNA methylation valleys

Y Li, H Zheng, Q Wang, C Zhou, L Wei, X Liu, W Zhang… - Genome biology, 2018 - Springer
Background Previous studies showed that the majority of developmental genes are devoid
of DNA methylation at promoters even when they are repressed. Such hypomethylated …

DNA methyltransferase 3a regulates osteoclast differentiation by coupling to an S-adenosylmethionine–producing metabolic pathway

K Nishikawa, Y Iwamoto, Y Kobayashi, F Katsuoka… - Nature medicine, 2015 - nature.com
Metabolic reprogramming occurs in response to the cellular environment to mediate
differentiation,,, but the fundamental mechanisms linking metabolic processes to …

Genome‐wide profiling of bone reveals differentially methylated regions in osteoporosis and osteoarthritis

J Delgado‐Calle, AF Fernández, J Sainz… - Arthritis & …, 2013 - Wiley Online Library
Objective To determine genome‐wide methylation profiles of bone from patients with hip
osteoarthritis (OA) and those with osteoporotic (OP) hip fractures. Methods Trabecular bone …

[HTML][HTML] DNA methyltransferase 3b regulates articular cartilage homeostasis by altering metabolism

J Shen, C Wang, D Li, T Xu, J Myers, JM Ashton… - JCI insight, 2017 - ncbi.nlm.nih.gov
Osteoarthritis (OA) is the most common form of arthritis worldwide. It is a complex disease
affecting the whole joint but is generally characterized by progressive degradation of …

WTAP-mediated m6A RNA methylation regulates the differentiation of bone marrow mesenchymal stem cells via the miR-29b-3p/HDAC4 axis

J Liu, Y You, Z Sun, L Zhang, X Li, Z Dai… - Stem Cells …, 2023 - academic.oup.com
Abstract N6-methyladenosine (m6A) methylation, a well-known modification with new
epigenetic functions, has been reported to participate in the progression of osteoporosis …

A comparative analysis of DNA methylation across human embryonic stem cell lines

PY Chen, S Feng, JWJ Joo, SE Jacobsen, M Pellegrini - Genome biology, 2011 - Springer
Background We performed a comparative analysis of the genome-wide DNA methylation
profiles from three human embryonic stem cell (HESC) lines. It had previously been shown …

DNA methylation disruption reshapes the hematopoietic differentiation landscape

F Izzo, SC Lee, A Poran, R Chaligne, F Gaiti, B Gross… - Nature …, 2020 - nature.com
Mutations in genes involved in DNA methylation (DNAme; for example, TET2 and DNMT3A)
are frequently observed in hematological malignancies,–and clonal hematopoiesis …