Pybel: a Python wrapper for the OpenBabel cheminformatics toolkit
NM O'Boyle, C Morley, GR Hutchison - Chemistry Central Journal, 2008 - Springer
Background Scripting languages such as Python are ideally suited to common programming
tasks in cheminformatics such as data analysis and parsing information from files. However …
tasks in cheminformatics such as data analysis and parsing information from files. However …
KNIME-CDK: Workflow-driven cheminformatics
S Beisken, T Meinl, B Wiswedel, LF de Figueiredo… - BMC …, 2013 - Springer
Background Cheminformaticians have to routinely process and analyse libraries of small
molecules. Among other things, that includes the standardization of molecules, calculation of …
molecules. Among other things, that includes the standardization of molecules, calculation of …
Open Babel: An open chemical toolbox
NM O'Boyle, M Banck, CA James, C Morley… - Journal of …, 2011 - Springer
Background A frequent problem in computational modeling is the interconversion of
chemical structures between different formats. While standard interchange formats exist (for …
chemical structures between different formats. While standard interchange formats exist (for …
Bioclipse: an open source workbench for chemo-and bioinformatics
Background There is a need for software applications that provide users with a complete
and extensible toolkit for chemo-and bioinformatics accessible from a single workbench …
and extensible toolkit for chemo-and bioinformatics accessible from a single workbench …
The Chemistry Development Kit (CDK) v2. 0: atom typing, depiction, molecular formulas, and substructure searching
Abstract Background The Chemistry Development Kit (CDK) is a widely used open source
cheminformatics toolkit, providing data structures to represent chemical concepts along with …
cheminformatics toolkit, providing data structures to represent chemical concepts along with …
ChemDB: a public database of small molecules and related chemoinformatics resources
J Chen, SJ Swamidass, Y Dou, J Bruand… - Bioinformatics, 2005 - academic.oup.com
Motivation: The development of chemoinformatics has been hampered by the lack of large,
publicly available, comprehensive repositories of molecules, in particular of small …
publicly available, comprehensive repositories of molecules, in particular of small …
Cheminformatics analysis and learning in a data pipelining environment
M Hassan, RD Brown, S Varma-O'Brien, D Rogers - Molecular diversity, 2006 - Springer
Workflow technology is being increasingly applied in discovery information to organize and
analyze data. SciTegic's Pipeline Pilot is a chemically intelligent implementation of a …
analyze data. SciTegic's Pipeline Pilot is a chemically intelligent implementation of a …
ChemMine tools: an online service for analyzing and clustering small molecules
TWH Backman, Y Cao, T Girke - Nucleic acids research, 2011 - academic.oup.com
ChemMine Tools is an online service for small molecule data analysis. It provides a web
interface to a set of cheminformatics and data mining tools that are useful for various …
interface to a set of cheminformatics and data mining tools that are useful for various …
MolBook UNIPI─ create, manage, analyze, and share your chemical data for free
S Galati, M Di Stefano, M Macchia, G Poli… - Journal of Chemical …, 2023 - ACS Publications
Here, we present MolBook UNIPI, freely available and user-friendly software specifically
designed for medicinal chemists as a powerful tool for the easy management of virtual …
designed for medicinal chemists as a powerful tool for the easy management of virtual …
The Blue Obelisk—interoperability in chemical informatics
R Guha, MT Howard, GR Hutchison… - Journal of chemical …, 2006 - ACS Publications
The Blue Obelisk Movement (http://www. blueobelisk. org/) is the name used by a diverse
Internet group promoting reusable chemistry via open source software development …
Internet group promoting reusable chemistry via open source software development …