[HTML][HTML] Methods in DNA methylation array dataset analysis: A review
K Sahoo, V Sundararajan - Computational and Structural Biotechnology …, 2024 - Elsevier
Understanding the intricate relationships between gene expression levels and epigenetic
modifications in a genome is crucial to comprehending the pathogenic mechanisms of many …
modifications in a genome is crucial to comprehending the pathogenic mechanisms of many …
[HTML][HTML] Review of processing and analysis methods for DNA methylation array data
The promise of epigenome-wide association studies and cancer-specific somatic DNA
methylation changes in improving our understanding of cancer, coupled with the decreasing …
methylation changes in improving our understanding of cancer, coupled with the decreasing …
[HTML][HTML] A statistical method for excluding non-variable CpG sites in high-throughput DNA methylation profiling
H Meng, AR Joyce, DE Adkins, P Basu, Y Jia, G Li… - BMC …, 2010 - Springer
Background High-throughput DNA methylation arrays are likely to accelerate the pace of
methylation biomarker discovery for a wide variety of diseases. A potential problem with a …
methylation biomarker discovery for a wide variety of diseases. A potential problem with a …
DBCAT: database of CpG islands and analytical tools for identifying comprehensive methylation profiles in cancer cells
HC Kuo, PY Lin, TC Chung, CM Chao… - Journal of …, 2011 - liebertpub.com
DBCAT (database of CpG islands and analytical tools, http://dbcat. cgm. ntu. edu. tw/),
developed to characterize comprehensive DNA methylation profiles in human cancers, is a …
developed to characterize comprehensive DNA methylation profiles in human cancers, is a …
Genome-scale DNA methylation analysis
SD Fouse, RP Nagarajan, JF Costello - Epigenomics, 2010 - Taylor & Francis
The haploid human genome contains approximately 29 million CpGs that exist in a
methylated, hydroxymethylated or unmethylated state, collectively referred to as the DNA …
methylated, hydroxymethylated or unmethylated state, collectively referred to as the DNA …
coMethDMR: accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studies with continuous phenotypes
Recent technology has made it possible to measure DNA methylation profiles in a cost-
effective and comprehensive genome-wide manner using array-based technology for …
effective and comprehensive genome-wide manner using array-based technology for …
An evaluation of supervised methods for identifying differentially methylated regions in Illumina methylation arrays
Epigenome-wide association studies (EWASs) have become increasingly popular for
studying DNA methylation (DNAm) variations in complex diseases. The Illumina methylation …
studying DNA methylation (DNAm) variations in complex diseases. The Illumina methylation …
[HTML][HTML] computational methods for analysis of DNA methylation data
DNA methylation is among the most studied epigenetic modifications in eukaryotes. The
interest in DNA methylation stems from its role in development, as well as its wellestablished …
interest in DNA methylation stems from its role in development, as well as its wellestablished …
[HTML][HTML] Systematic evaluation of genome-wide methylated DNA enrichment using a CpG island array
Background Recent progress in high-throughput technologies has greatly contributed to the
development of DNA methylation profiling. Although there are several reports that describe …
development of DNA methylation profiling. Although there are several reports that describe …
High-throughput DNA methylation profiling using universal bead arrays
M Bibikova, Z Lin, L Zhou, E Chudin… - Genome …, 2006 - genome.cshlp.org
We have developed a high-throughput method for analyzing the methylation status of
hundreds of preselected genes simultaneously and have applied it to the discovery of …
hundreds of preselected genes simultaneously and have applied it to the discovery of …