[HTML][HTML] Transcriptional regulatory model of fibrosis progression in the human lung

JE McDonough, F Ahangari, Q Li, S Jain, SE Verleden… - JCI insight, 2019 - ncbi.nlm.nih.gov
To develop a systems biology model of fibrosis progression within the human lung we
performed RNA sequencing and microRNA analysis on 95 samples obtained from 10 …

Impact of transcriptomics on our understanding of pulmonary fibrosis

M Vukmirovic, N Kaminski - Frontiers in medicine, 2018 - frontiersin.org
Idiopathic pulmonary fibrosis (IPF) is a lethal fibrotic lung disease characterized by aberrant
remodeling of the lung parenchyma with extensive changes to the phenotypes of all lung …

[HTML][HTML] Single-cell RNA sequencing identifies diverse roles of epithelial cells in idiopathic pulmonary fibrosis

Y Xu, T Mizuno, A Sridharan, Y Du, M Guo, J Tang… - JCI insight, 2016 - ncbi.nlm.nih.gov
Idiopathic pulmonary fibrosis (IPF) is a lethal interstitial lung disease characterized by airway
remodeling, inflammation, alveolar destruction, and fibrosis. We utilized single-cell RNA …

[HTML][HTML] NF-κB drives epithelial-mesenchymal mechanisms of lung fibrosis in a translational lung cell model

P Sieber, A Schäfer, R Lieberherr, SL Caimi, U Lüthi… - JCI insight, 2023 - ncbi.nlm.nih.gov
In the progression phase of idiopathic pulmonary fibrosis (IPF), the normal alveolar structure
of the lung is lost and replaced by remodeled fibrotic tissue and by bronchiolized cystic …

Spatially distinct molecular patterns of gene expression in idiopathic pulmonary fibrosis

RZ Blumhagen, JS Kurche, CD Cool, AD Walts… - Respiratory …, 2023 - Springer
Background Idiopathic pulmonary fibrosis (IPF) is a heterogeneous disease that is
pathologically characterized by areas of normal-appearing lung parenchyma, active fibrosis …

Towards systems biology of human pulmonary fibrosis

SM Studer, N Kaminski - Proceedings of the American Thoracic …, 2007 - atsjournals.org
The integrated effect of multiple pathways, molecules, genetic polymorphisms,
environmental stimuli, and possible infection determines the lung phenotype in idiopathic …

Systems analysis of transcriptomic and proteomic profiles identifies novel regulation of fibrotic programs by miRNAs in pulmonary fibrosis fibroblasts

S Mullenbrock, F Liu, S Szak, X Hronowski, B Gao… - Genes, 2018 - mdpi.com
Fibroblasts/myofibroblasts are the key effector cells responsible for excessive extracellular
matrix (ECM) deposition and fibrosis progression in both idiopathic pulmonary fibrosis (IPF) …

Gene correlation network analysis to identify regulatory factors in idiopathic pulmonary fibrosis

JE McDonough, N Kaminski, B Thienpont, JC Hogg… - Thorax, 2019 - thorax.bmj.com
Background Idiopathic pulmonary fibrosis (IPF) is a severe lung disease characterised by
extensive pathological changes. The objective for this study was to identify the gene network …

Molecular signatures of idiopathic pulmonary fibrosis

IR Konigsberg, R Borie, AD Walts… - American journal of …, 2021 - atsjournals.org
Molecular patterns and pathways in idiopathic pulmonary fibrosis (IPF) have been
extensively investigated, but few studies have assimilated multiomic platforms to provide an …

Systems biology of interstitial lung diseases: integration of mRNA and microRNA expression changes

JH Cho, R Gelinas, K Wang, A Etheridge… - BMC medical …, 2011 - Springer
Background The molecular pathways involved in the interstitial lung diseases (ILDs) are
poorly understood. Systems biology approaches, with global expression data sets, were …